View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18862_low_2 (Length: 375)
Name: NF18862_low_2
Description: NF18862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18862_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8191474 - 8191233
Alignment:
| Q |
1 |
ttttccttagggtatactgatattattctgtctttcaataattgtttctaattacaagccctattccctttacagacttttcaaaataaaagattagcac |
100 |
Q |
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| T |
8191474 |
ttttccttagggtatactgatattattctgtctttcaataattgtttctaattacaagccctattccctttacagacttttcaaaataaaatattagcac |
8191375 |
T |
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| Q |
101 |
atgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttggatgataatgttccacgtatggatgatggaagccaggtgtt |
200 |
Q |
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| T |
8191374 |
atgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttggatgataatgttccacgtatggatgatggaagccagttgtt |
8191275 |
T |
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| Q |
201 |
gaaagctttgaatgtattgattcttaagattctggtaagaga |
242 |
Q |
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| T |
8191274 |
gaaagctttgaatgtattgattcttaagattctggtaagaga |
8191233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 8191171 - 8191119
Alignment:
| Q |
304 |
ggtagtaatgataatgtgtgtttttatgatgtaaatcataagtacaagttagt |
356 |
Q |
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| T |
8191171 |
ggtagtaatgataatgtgtgtttttatgatgtaaatcataagtacaagttagt |
8191119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 42349220 - 42349044
Alignment:
| Q |
66 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttggatgat |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
42349220 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgatagcctcattacagagcttcttctgtggctcttggatgat |
42349121 |
T |
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| Q |
166 |
aatgttccacgtatggatgatggaagccaggtgttgaaagctttgaatgtattgattcttaagattctggtaagaga |
242 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42349120 |
aatgttccacgcatggatgatggaagccagttgttgaaagcattgaatgtattgatgcttaagattctggtaagaga |
42349044 |
T |
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