View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_high_10 (Length: 360)
Name: NF18863_high_10
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 1191788 - 1192142
Alignment:
| Q |
8 |
gtgtctgtgcttcatagtattatattctatcaatatcaatgagtgaatattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaa |
107 |
Q |
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| T |
1191788 |
gtgtccgtgcttcatagtattatattctatcaatatcaatgagtgaatattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaa |
1191887 |
T |
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| Q |
108 |
catttacacgttgacaccgatct-----tgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcgaacattgacatg |
202 |
Q |
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| T |
1191888 |
catttacacgttgacaccgatctaatcttgagaaaattacataaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcggacattaacatg |
1191987 |
T |
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| Q |
203 |
tgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctctctatttctttcggtataaaatttcagctcgatct |
302 |
Q |
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| T |
1191988 |
tgttgtacaccagaacacaccgtggatcataagtgccggttctatatcaagctattacacttctctctatttctttcagtataaaatttcagctcgatct |
1192087 |
T |
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| Q |
303 |
cattgttgtgtacctatgatatcaatcagcaagcaacaagcctttcatctcactc |
357 |
Q |
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| T |
1192088 |
cattgttgtgtacctatgatatcaattagcaagcaacaagcctttcatctcactc |
1192142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 1178462 - 1178710
Alignment:
| Q |
28 |
tatattctatcaatatcaatgag----tgaa-tattaattagtattgccttccctctcccaaagaatgaagcacagacacacaaacatttacacgttgac |
122 |
Q |
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| T |
1178462 |
tatattctatcaatatcaatgagagcttgaggtattaat-agtattgccttccctctcccaaagaaagaagcacaaacatacaaacacttacacgttgac |
1178560 |
T |
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| Q |
123 |
ac-----cgatcttgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggtgtcgaacattgacatgtgttgtacaccagaa |
217 |
Q |
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| T |
1178561 |
actgatacaatcttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagtgtcaggaccagacattgacatgtgtcgtacaccggaa |
1178660 |
T |
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| Q |
218 |
cacaccatggatcataagtgccggttctatatcaagctattacacttctct |
268 |
Q |
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| T |
1178661 |
cacaccat-gatcataaggggcggttttataacaagctattacgcttctct |
1178710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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