View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_high_16 (Length: 217)
Name: NF18863_high_16
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 27960804 - 27960637
Alignment:
| Q |
23 |
taattactaatcaaaaccatattgaattgaatcaagattccgataacataacaactattcaaatctgggttacagagcaaaacttatgactaaaatacca |
122 |
Q |
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| T |
27960804 |
taattactaatcaaaaccatattaaattgaatcaagattccgataatataacaagcattcaaatctaggttacagagcaaaacttatgactcaaatacca |
27960705 |
T |
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| Q |
123 |
catgtatacccatacgaatttctactcaaatgtcataaagcttaagtataatcacttttaacaataat |
190 |
Q |
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| T |
27960704 |
catgtatacccatacgaatttctactcaaatgtcataaagctcaagtataatcacttttaacaataat |
27960637 |
T |
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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 2522443 - 2522327
Alignment:
| Q |
81 |
tcaaatctgggttacagagcaaaacttatgactaaaataccacatgtatacccatacgaatttctactcaaatgtcataaagcttaagtataatcacttt |
180 |
Q |
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||||| || ||||| |||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||| |||||||| | ||||| ||||||||| |
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| T |
2522443 |
tcaaaacttggttatagagcaaaacttatgactcaaataccacatgtacacccgtacgaaattctactcaaatttcataaagttcaagtacaatcacttt |
2522344 |
T |
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| Q |
181 |
taacaataataatccat |
197 |
Q |
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| T |
2522343 |
taacagtaataatccat |
2522327 |
T |
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