View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_high_6 (Length: 497)
Name: NF18863_high_6
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 2672679 - 2672227
Alignment:
| Q |
14 |
ttctcctacgaggaaatatgcatgttagttttgaacatcaagattcaactcttaa---------ctcctttctcatcaaatatgcctactttcatttgaa |
104 |
Q |
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| T |
2672679 |
ttctcctacgaggaaatatgcatgtcagcgttgaacatcaagattcaactctttatatttctgactcctttctcatcaaatatgccta-------ttgaa |
2672587 |
T |
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| Q |
105 |
gaaaattgtacacgccactcacgatgataattaagaagagatatagaaaaactaataagttaatatatgtttgttatttatccattatagttagggtatg |
204 |
Q |
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| T |
2672586 |
gaaaattgtacacgctactcacgatgataattaggaagagatatagaaaaactaataagtta-------tttatccattat---ttatagttagggtatg |
2672497 |
T |
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| Q |
205 |
tttggtgacactaataagctagcttataatttattgtactagttcatataattctttgataaaaatgaaatgtgtttgataacaaccttatctcactgtc |
304 |
Q |
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| T |
2672496 |
tttggtggcactaataaactagcttataatttattgtactagtttatatacttgtttgataaaaatgaaatctgtttggtaacaaccttatctcactgtc |
2672397 |
T |
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| Q |
305 |
atatagggtatatttaccataaagagccttaatgttgttatttatattatcacttttgacatttactgttttgtttaagcagataaatggatgattcatc |
404 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
2672396 |
atatagagtatatttaccataaagagccttaatgttgttatttatattatcacttttgacatttactgttttgtctaaacagataaatggatgattcatc |
2672297 |
T |
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| Q |
405 |
gattactgcatcttcagtatacggttcgtctagtcagacaaagaaaagaaagactttcaaccaacaatgt |
474 |
Q |
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| T |
2672296 |
gattactgcatcttcactatacggttcgtctagtcagacaaagaaaagaaagactttcaaccaacaatgt |
2672227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 7300831 - 7300725
Alignment:
| Q |
195 |
ttagggtatgtttggtgacactaataagctagcttataatttattgtactagttcatataattctttgataaaaatgaaatgtgtttgataacaacctta |
294 |
Q |
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||||| |||||||| |||||||||||||| |||||| |||||||||||| | ||| || |||| |||||||||| ||||||||||||| |||| |
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| T |
7300831 |
ttaggctatgtttgaaaacactaataagctaacttatagcttattgtactagcttataagcttgcttgagaaaaatgaaacatgtttgataacaagctta |
7300732 |
T |
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| Q |
295 |
tctcact |
301 |
Q |
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| T |
7300731 |
tatcact |
7300725 |
T |
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