View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18863_high_7 (Length: 461)
Name: NF18863_high_7
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 36657680 - 36658123
Alignment:
| Q |
1 |
aatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattagtaagaaatgagtagaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36657680 |
aatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattagtaagaaatgagtggaca |
36657779 |
T |
|
| Q |
101 |
aatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgttaacattaaacttctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36657780 |
aatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgttaacattaaacttctct |
36657879 |
T |
|
| Q |
201 |
gtggttgagtttgattattccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgttttgctttaaagatcgct |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36657880 |
gtggttgagtttgattatcccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgttttgctttaaagatcgct |
36657979 |
T |
|
| Q |
301 |
tttggtgttgagaaatcacagtattgcggatg---nnnnnnnnngaatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaata |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36657980 |
tttggtgttgagaaatcacagtattgcggatgagaaaaaaaaaaaaatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaata |
36658079 |
T |
|
| Q |
398 |
ataatatacatatgctatttagaggtatatatcgtcactacatt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36658080 |
ataatatacatatgctatttagaggtatatatcgtcactacatt |
36658123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University