View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_low_1 (Length: 911)
Name: NF18863_low_1
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 798; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 19 - 903
Target Start/End: Complemental strand, 46064277 - 46063382
Alignment:
| Q |
19 |
atgtaaatgttattttgtatcctttttgaagacttaattagtaagacaaaggctgtttctgttggaaatgtatattgcatggttttgattgctgttttat |
118 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46064277 |
atgtaaatgttattttatatcctttttgaagacttaattagtaagacaaaggctgtttctgttggaaatgtatattgcacggttttgattgctgttttat |
46064178 |
T |
|
| Q |
119 |
tgcagtagcctgatttacatgt-------acatatcaaaatgcataaataatgactggtgcaggatgctgagcatgaacttgaagccacaactcagttgc |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46064177 |
tgcagtagcctgatttacatgttggcctaacatatcaaaatgcataaataatgactggtgcaggatgctgagcatgaacttgaagccacaactcagttgc |
46064078 |
T |
|
| Q |
212 |
acaagttatgttctcaatatgaatccaatatcgaaaagtaagtctcatgtcactccgatattcccttccttgcctaatacttatttccagcctttatagg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46064077 |
acaagttatgttctcaatatgaatccaatatcgaaaagtaagtctcatgtcactccgatattcccttccttgcctaatacttaattccagcctttatagg |
46063978 |
T |
|
| Q |
312 |
tcttcaacagactgttgctgagctgatatttttaattgttgttaattgtaatgcatatctctggtgggtttagtatcagacatcagtatttcttattgga |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46063977 |
tcttcaacagactgttgctgagctgatatttttaattgttgttaattgtaatgcatatctctggtgggtttagtatcagacatcagtatttcttatt-ga |
46063879 |
T |
|
| Q |
412 |
ctttcttcacttgtaaactgtatattttgcatggctaaatgctgttttctgatggtcattgtgtg----tgtaagtttcattttttacaatgttgaaatg |
507 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
46063878 |
ctttcttcacttgtaaactgtatagtttgcatggctaaatgctgttttctgatggtaattgtgtgtacctgtaagtttcattttttacaatgttgaaatg |
46063779 |
T |
|
| Q |
508 |
tatcttttacgcaactttatgttggggtgggaatatgtactttgcaagacttcaagaactattagtagcatcacaaatttttaaaagctgaccagtggaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
46063778 |
tatcttttacgcaactttatgttggggtgggaatatgtactttgcaagacttcaagaactattagtagcatcacaagtttttaaaagctgaccagtggaa |
46063679 |
T |
|
| Q |
608 |
gtggttattttattgcttgaacttcaaaggttagcataactgtgttagattttgggatgattttattacgctgaagaaacttattcaagagacacttatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
46063678 |
gtggttattttattgcttgaacttcaaaggttagcataactgtgttagattttgggatgattttattacgctgaagaaacttattcaagaggcacttatt |
46063579 |
T |
|
| Q |
708 |
ggtaatgaatttgattggtgt-gggaagaaacttattcaagaggcacttattggtaatgcgtagacagtactatgacttgataatttccctataatctga |
806 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46063578 |
ggtaatgaatttgattggtgtggggaagaaacttattcaagaggcacttattggtaatgcgtagacagtactatgacttgataatttccctataatctga |
46063479 |
T |
|
| Q |
807 |
gagcacttaaagtataattttgtacatgaaaaacttgtttagaagagtatcgtcgtcagcatgacatgaattgtatataaatttaagagtcccctat |
903 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
46063478 |
gagcacttaaagtataattttgtacgtgaaaaacttgtttagaagagtatcgtcgtcagcatgacatgaatagtatataaatttaagagtcctctat |
46063382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 323 - 683
Target Start/End: Complemental strand, 46059659 - 46059306
Alignment:
| Q |
323 |
ctgttgctgagctgatatttttaattgttgttaattgtaatgcatatctctggtgggtttagtatcagacatcagtatttcttattggactttcttcact |
422 |
Q |
| |
|
|||||| | |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
46059659 |
ctgttgttcagctgatatttt-aattcttgttaattgtaatgcatatctctggtaggtttagtatcag-------tatttcttattg-actttcttcact |
46059569 |
T |
|
| Q |
423 |
tgtaaactgtatattttgcatggctaaatgctgttttctgatggtcattgtgtgt----gtaagtttcattttttacaatgttgaaatgtatcttttacg |
518 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
46059568 |
tgtaaactgtatattttgcatgactaaatgttgttttctgatggtaattgtgtgtacctgtatgtttcattttttacaatgttgaaatgtatcttttacg |
46059469 |
T |
|
| Q |
519 |
caactttatgttggggtgggaatatgtactttgcaagacttcaagaactattagtagcatcacaaatttttaaaagctgaccagtggaagtggttatttt |
618 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
46059468 |
ctactttatgttggggtgggaatatgtactttgcaagacgttaagaactattagtagcatcacaa--ttttaaaagctgaccagtggaaaaggttatttt |
46059371 |
T |
|
| Q |
619 |
attgcttgaacttcaaaggttagcataactgtgttagattttgggatgattttattacgctgaag |
683 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46059370 |
attgtttgaacttcaaaggttagcataattgtgttagattttgggatgattttattacgctgaag |
46059306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 46060041 - 46059732
Alignment:
| Q |
19 |
atgtaaatgttattttgtatcctttttgaagacttaattagtaagacaaaggctgtttctgttggaaatgtatattgcatggttttgattgctgttttat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
46060041 |
atgtaaatgttattttgtatcctttttgaagacttagttagttagacaatgtttgtttctgttggaaatgtatatt-catggttttgattgctgttttgt |
46059943 |
T |
|
| Q |
119 |
tgcagtagcctgatttacatgt-------acatatcaaaatgcataaataatgactggtgcaggatgctgagcatgaacttgaagccacaactcagttgc |
211 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
46059942 |
tgcagttgcctgatttacatgttgacctgacatatcaaaatgcataaataatgactggtgcaggatgatgagcatgaacttgaagtcacaactcagttgc |
46059843 |
T |
|
| Q |
212 |
acaag-ttatgttctcaatatgaatccaatatcgaaaagtaagtctcatgtcactccgatattcccttccttgcctaatacttatttccagcctttatag |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
46059842 |
acaaaattatgttctcaatatgaatccaatattgaaaagtaagtctcgtgtcactcctatattcccttcattgccttatacttatttccagcctttatag |
46059743 |
T |
|
| Q |
311 |
gtcttcaacag |
321 |
Q |
| |
|
|||| |||||| |
|
|
| T |
46059742 |
gtctgcaacag |
46059732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 772 - 898
Target Start/End: Complemental strand, 46058871 - 46058745
Alignment:
| Q |
772 |
cagtactatgacttgataatttccctataatctgagagcacttaaagtataattttgtacatgaaaaacttgtttagaagagtatcgtcgtcagcatgac |
871 |
Q |
| |
|
||||||||| || |||||| |||||| ||||||||||| | ||||| |||||||||||| | | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46058871 |
cagtactataacctgataacttccctttaatctgagaggatttaaaatataattttgtaggtcacaaacttgtttagaagagtatcgtcgtcaggatgac |
46058772 |
T |
|
| Q |
872 |
atgaattgtatataaatttaagagtcc |
898 |
Q |
| |
|
|| |||||||||||| ||||||||||| |
|
|
| T |
46058771 |
ataaattgtatataactttaagagtcc |
46058745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 715 - 761
Target Start/End: Complemental strand, 6589138 - 6589091
Alignment:
| Q |
715 |
aatttgattggtgtggg-aagaaacttattcaagaggcacttattggt |
761 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6589138 |
aatttgattggtgtggggaagaaacttattcaagaggcacttattggt |
6589091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 715 - 757
Target Start/End: Complemental strand, 7294555 - 7294512
Alignment:
| Q |
715 |
aatttgattggtgtggg-aagaaacttattcaagaggcacttat |
757 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7294555 |
aatttgattggtgtggggaagaaacttattcaagaggcacttat |
7294512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 761
Target Start/End: Original strand, 11741490 - 11741537
Alignment:
| Q |
715 |
aatttgattggtg-tgggaagaaacttattcaagaggcacttattggt |
761 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
11741490 |
aatttgattggtgctaggaagaaacttattcaagaggcatttattggt |
11741537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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