View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_low_12 (Length: 254)
Name: NF18863_low_12
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29704496 - 29704295
Alignment:
| Q |
1 |
ttggcaagaaatgacactaggctaaaaaaccaccaatcagtaatgttacaaaccaatatcaactggggtaattgagataaattagtttaatgtcacaatt |
100 |
Q |
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| T |
29704496 |
ttggcaagaaatgacactaggctaaaaaaccaccaatcagtaatgttacaacccaatatcaactggggtaattgagataaattagtttaatgtcacaatt |
29704397 |
T |
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| Q |
101 |
tatctgaggtttatatttcatatcttttggtttttcaagagttgtggatgcaactattgtccttaagattttgaggtcaaacggggaatatgctgcacat |
200 |
Q |
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| T |
29704396 |
tatctgaggtttatatttcatatcttttggtttttgaagagttgtggatgcaactattgtccttaagattttgaggtcaaacagggaatatgctgcacat |
29704297 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
29704296 |
tt |
29704295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 30081397 - 30081581
Alignment:
| Q |
53 |
ccaatatcaactggggtaattgagataaattagtttaatgtcacaatttatctgaggtttatatttcatatcttttggtttttcaagagttgtggatgca |
152 |
Q |
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||||||||||||||||| ||||||||||||||||| | ||| |||||||| || ||||||||||||||||||||||| |||| |||||| | | |
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| T |
30081397 |
ccaatatcaactggggtcattgagataaattagttcagtgttgcaatttatttgtggtttatatttcatatcttttggatttttaagagt-----accaa |
30081491 |
T |
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| Q |
153 |
actattgtccttaagattttgaggtcaaacggggaatatgctgcacattttaattacaagaatttaagttcctttacatagccttgttcat |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30081492 |
actattgtccttaagattttgaggtcaaatagggaatatgctgctc-ttttaattacaagaatttgagttcctttacatagccttgttcat |
30081581 |
T |
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