View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18863_low_13 (Length: 253)

Name: NF18863_low_13
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18863_low_13
NF18863_low_13
[»] chr5 (1 HSPs)
chr5 (8-253)||(28152063-28152305)
[»] chr6 (6 HSPs)
chr6 (86-125)||(12877811-12877850)
chr6 (89-125)||(20759303-20759339)
chr6 (86-123)||(14579001-14579038)
chr6 (86-125)||(2936651-2936690)
chr6 (86-125)||(3836144-3836183)
chr6 (88-126)||(15951541-15951579)
[»] chr4 (7 HSPs)
chr4 (86-125)||(6685778-6685817)
chr4 (86-125)||(31768285-31768324)
chr4 (86-126)||(13250994-13251034)
chr4 (86-125)||(572234-572273)
chr4 (86-125)||(580637-580676)
chr4 (86-125)||(6664424-6664463)
chr4 (86-125)||(6682323-6682362)
[»] chr7 (3 HSPs)
chr7 (84-125)||(38414115-38414156)
chr7 (86-125)||(37006261-37006300)
chr7 (16-89)||(37006353-37006426)
[»] chr1 (2 HSPs)
chr1 (88-125)||(48715079-48715116)
chr1 (86-126)||(27793839-27793879)
[»] chr2 (1 HSPs)
chr2 (86-122)||(80466-80502)
[»] scaffold0321 (1 HSPs)
scaffold0321 (86-125)||(17970-18009)
[»] scaffold0019 (1 HSPs)
scaffold0019 (86-125)||(174071-174110)
[»] chr3 (2 HSPs)
chr3 (86-125)||(6240659-6240698)
chr3 (86-125)||(26361893-26361932)
[»] scaffold0933 (1 HSPs)
scaffold0933 (86-126)||(1586-1626)
[»] chr8 (2 HSPs)
chr8 (90-125)||(29275385-29275420)
chr8 (86-120)||(29260363-29260397)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 28152063 - 28152305
Alignment:
Q  8 aagcaaaggtggtaacacaatttggaattaaaagcatatctagaaacccaagtcaaacacaataattactcatatgataatatttgaaacttttgaaata 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28152063 aagcaaaggtggtaacacagtttggaattaaaagcatgtctagaaacccaagtcaaacacaataattactcatatgataatatttgaaacttttgaaata 28152162  T
Q  108 tactcaaaatttacaacatcacgaacctgccatgcttttatacgtgatttataatctgctgcagcgaatggtgacatgttgttggtagacttcactttcc 207  Q
    |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||    
T  28152163 tactcaaaatttacaacaccacgaacccgccatacttttctacgtgatttataatctactgcagcgaatggtgaca---tgttggtagacttcactttcc 28152259  T
Q  208 gactcgattcgctaagctagcacatctcctcgcttagcaaaatcac 253  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  28152260 gactcaattcgctaagctagcacatctcctcgcttagcaaaatcac 28152305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 12877811 - 12877850
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12877811 aatatttgaaacttttgaaatatactcaaaatttacaaca 12877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 20759303 - 20759339
Alignment:
Q  89 atttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  20759303 atttgaaacttttgaaatatactcaaaatttacaaca 20759339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 14579038 - 14579001
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaa 123  Q
    |||||||||||||||||||||||| |||||||||||||    
T  14579038 aatatttgaaacttttgaaatataatcaaaatttacaa 14579001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 2936651 - 2936690
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  2936651 aatatttgaaatttttgaaatataatcaaaatttacaaca 2936690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 3836144 - 3836183
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  3836144 aatatttgaaacttttgaaatatgttcaaaatttacaaca 3836183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 15951579 - 15951541
Alignment:
Q  88 tatttgaaacttttgaaatatactcaaaatttacaacat 126  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  15951579 tatttaaaacttttgaaatatactcaaaatttagaacat 15951541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 6685817 - 6685778
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6685817 aatatttgaaacttttgaaatatactcaaaatttacaaca 6685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 31768285 - 31768324
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31768285 aatatttgaaacttttgaaatatactcaaaatttacaaca 31768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 13250994 - 13251034
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaacat 126  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  13250994 aatatttgaaacttttgaaatataatcaaaatttacaacat 13251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 572234 - 572273
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  572234 aatattagaaacttttgaaatatactcaaaatttacaaca 572273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 580637 - 580676
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  580637 aatatttaaaacttttgaaatatactcaaaatttacaaca 580676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 6664424 - 6664463
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  6664424 aatatttgaaacttttgaaatacactcaaaatttacaaca 6664463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 6682362 - 6682323
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  6682362 aatatttgaaacttttaaaatatactcaaaatttataaca 6682323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 38414156 - 38414115
Alignment:
Q  84 ataatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  38414156 ataatatttaaaacttttgaaatatactcaaaatttacaaca 38414115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 37006300 - 37006261
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37006300 aatatttgaaacttttaaaatatactcaaaatttacaaca 37006261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 37006426 - 37006353
Alignment:
Q  16 gtggtaacacaatttggaattaaaagcatatctagaaacccaagtcaaacacaataattactcatatgataata 89  Q
    ||||| ||| ||||||||||||||| ||| |||| |||  |||||||||||  ||||||| | |||||||||||    
T  37006426 gtggttacaaaatttggaattaaaaacatgtctacaaaatcaagtcaaacattataattaataatatgataata 37006353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 48715079 - 48715116
Alignment:
Q  88 tatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48715079 tatttgaaacttttgaaatatactcaaaatttacaaca 48715116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 27793839 - 27793879
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaacat 126  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27793839 aatatttaaaacttttgaaatatactcaaaatttacaacat 27793879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 80502 - 80466
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttaca 122  Q
    |||||||||||||||||||||||||||||||||||||    
T  80502 aatatttgaaacttttgaaatatactcaaaatttaca 80466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 18009 - 17970
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  18009 aatatttgaaacttttgaaatatacttaaaatttacaaca 17970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 174110 - 174071
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  174110 aatatttgaaacttttgaaatataatcaaaatttacaaca 174071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 6240659 - 6240698
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  6240659 aatatttaaaacttttgaaatatactcaaaatttacaaca 6240698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 26361932 - 26361893
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26361932 aatatttgaaacttttgaaatatactcaaaaattacaaca 26361893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 1586 - 1626
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaatttacaacat 126  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  1586 aatatttgaaacttttaaaatataatcaaaatttacaacat 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 29275420 - 29275385
Alignment:
Q  90 tttgaaacttttgaaatatactcaaaatttacaaca 125  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29275420 tttgaaacttttgaaatatacacaaaatttacaaca 29275385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 29260397 - 29260363
Alignment:
Q  86 aatatttgaaacttttgaaatatactcaaaattta 120  Q
    ||||||||||||||||||||||||| |||||||||    
T  29260397 aatatttgaaacttttgaaatatacacaaaattta 29260363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University