View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18863_low_2 (Length: 690)
Name: NF18863_low_2
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 679
Target Start/End: Complemental strand, 43211990 - 43211327
Alignment:
| Q |
19 |
aatgcatcaattattattattaattgtaacaaacacataatcaagaaaatttgagggnnnnnnnnnnnnnnnn---cctggccattatattatctactat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
43211990 |
aatgcatcaattattattattaattgtaacaaacacataatcaagaaaatttgagggaaaaaagaaaaaaaaaaaacctggccattgtattatctactat |
43211891 |
T |
|
| Q |
116 |
tccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtgatctcattcctta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43211890 |
tccaagatgtctcctgcttctgcatattatattttctttcttgctgagtttcttgttctaaagtattcgtccttttatggatccgtgacctcattcctta |
43211791 |
T |
|
| Q |
216 |
ttttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgtctct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43211790 |
ttttgcacagggaacgattgttcttgtttttcaaccagcagaagaaggaggtgccggggctaagaaaattttagatgctggagccttagaaaatgtctct |
43211691 |
T |
|
| Q |
316 |
gccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211690 |
gccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaa |
43211591 |
T |
|
| Q |
416 |
taagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211590 |
taagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacg |
43211491 |
T |
|
| Q |
516 |
cgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaannnnnnnnggaaaccatagtgcaacattgtttatttacaac |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
43211490 |
cgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaaaaaatgttggaaaccgtagtgcaacattgtttatttacaac |
43211391 |
T |
|
| Q |
616 |
gatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaacctaatatcctcacaggtt |
679 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
43211390 |
gatttttgaatatgacgaaaacataagatctgaatgtcttcctaacctaatatcctcacaggtt |
43211327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 185 - 679
Target Start/End: Original strand, 41657605 - 41658100
Alignment:
| Q |
185 |
tccttttatggatccgtgatctcattccttatttt--gcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaa |
282 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
41657605 |
tccttttatggatctgtgatatcattccttatttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtggaggggccaagaaa |
41657704 |
T |
|
| Q |
283 |
attttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtccta |
382 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657705 |
attttagattctggagccttagaaaatgtttctgccatatttggattgcatatcggacctaacatacctttaggtgaagtggcatctaggtcaggtccta |
41657804 |
T |
|
| Q |
383 |
tgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657805 |
tgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaa |
41657904 |
T |
|
| Q |
483 |
tgtgattgttagcttacaacatattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaannnnnnnn |
582 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41657905 |
tgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccaggtaaaaacttgcaactcatcattgtttgaggaaa-aaatgtt |
41658003 |
T |
|
| Q |
583 |
ggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaacctaatatcctcacaggtt |
679 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
41658004 |
ggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggtt |
41658100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 206 - 568
Target Start/End: Original strand, 41651616 - 41651978
Alignment:
| Q |
206 |
tcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttaga |
305 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41651616 |
tcattccttattttgtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtgccggggctaagaaaattttagatgctggagccttaga |
41651715 |
T |
|
| Q |
306 |
aaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttcttt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| |||||||| ||||||| | || |||||| |
|
|
| T |
41651716 |
aaatgtctctgccatatttggattgcatgtcctaaataacttacctttaggtgaagtggcttctaggtctggtcctattgctgcaggaagcggtttcttt |
41651815 |
T |
|
| Q |
406 |
aaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacata |
505 |
Q |
| |
|
||||||||||||| |||| ||| || |||| ||||| |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
41651816 |
gaagcagtaataagcggcatggggggtcatggagccattcctcaccatgctatcgaccccattttggcggcttccaatgtagttgttagcttacaacaaa |
41651915 |
T |
|
| Q |
506 |
ttgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttg |
568 |
Q |
| |
|
||||||| ||||||| ||||||| | || ||||||||||| ||| |||||||| |||||||| |
|
|
| T |
41651916 |
ttgtttctcgcgaggttgatcccgtagactcccaggtaaaagtttacaactcatgattgtttg |
41651978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 185 - 568
Target Start/End: Complemental strand, 43226506 - 43226123
Alignment:
| Q |
185 |
tccttttatggatccgtgatctcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaat |
284 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
43226506 |
tccttttatggatccatgatatcattccttattttgtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtgctggggctaagcaaat |
43226407 |
T |
|
| Q |
285 |
tttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatg |
384 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
43226406 |
tttagacactggagccttagaaaatgtctctgccatatttggattgcatgtcctaagtaacttacctttaggtgaagtggcatcgaggtctggtcctatg |
43226307 |
T |
|
| Q |
385 |
cttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatg |
484 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| |||| ||| || |||| ||||| |||||| |||||||| |||||||||||||| ||||| |||| |
|
|
| T |
43226306 |
gctgcaggatgtggtttctttgaagcagtaataagcggcatggggggtcatggagccattcctcaccatgctatcgaccccattttggctgcttccaatg |
43226207 |
T |
|
| Q |
485 |
tgattgttagcttacaacatattgtttcacgcgaggctgatccccttgaaacccaggtaaaaatttgcaactcatcattgtttg |
568 |
Q |
| |
|
| |||||||||||||||| || ||||| ||||||| ||||||| | || ||||||||||| || |||||||| |||||||| |
|
|
| T |
43226206 |
tagttgttagcttacaacaaatcgtttctcgcgaggttgatcccgtagactcccaggtaaaagcttacaactcatgattgtttg |
43226123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 184 - 530
Target Start/End: Complemental strand, 43204801 - 43204453
Alignment:
| Q |
184 |
gtccttttatggatccgtgatctcattccttattttgc--acagggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaa |
281 |
Q |
| |
|
|||||| |||| ||| ||||| |||||||||||||| | ||||||| || ||||||||||||||||| |||||||||||||||| |||||||| || |
|
|
| T |
43204801 |
gtccttctatgtatctgtgatatcattccttatttttattatagggaacaatagttcttgtttttcaaccagcagaagaaggaggtggtggggctaaaaa |
43204702 |
T |
|
| Q |
282 |
aattttagattctggagccttagaaaatgtctctgccatatttggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcct |
381 |
Q |
| |
|
|||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| | |||| ||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
43204701 |
aattttagatgctggtgccttggaaaaagtctctgccatatttggattgcatgtcctaaataacttacctctaggtgaagtggcttctaggtccggtcct |
43204602 |
T |
|
| Q |
382 |
atgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcga |
481 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||| ||||| || ||||| |||| | |
|
|
| T |
43204601 |
atatttgcaggaaatggcttctttaaagcagtaataagcggcaggggaggccatgcagccattcctcaacattctatagaccctatattggcaacttcca |
43204502 |
T |
|
| Q |
482 |
atgtgattgttagcttacaacatattgtttcacgcgaggctgatcccct |
530 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
43204501 |
atgtgattgttagcttacaacaaattgtttctcgcgagattgatcccct |
43204453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 679
Target Start/End: Original strand, 41652009 - 41652092
Alignment:
| Q |
598 |
acattgtttatttacaacgatttttgaatatgacgaaaacatgaggtttgaatgtcttcctaac--ctaatatcctcacaggtt |
679 |
Q |
| |
|
||||| ||| ||||||| ||||||| |||||||||||||| ||||| | |||| ||||||||| |||||||||| |||||| |
|
|
| T |
41652009 |
acattatttgtttacaatgattttttaatatgacgaaaacctgaggcctaaatgccttcctaacaaataatatcctcgcaggtt |
41652092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 224 - 527
Target Start/End: Complemental strand, 5071529 - 5071226
Alignment:
| Q |
224 |
agggaacgattgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgtctctgccatatt |
323 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| |||||||| | ||||||||||||||||||||| | || || |||||||||||| |||| || || |
|
|
| T |
5071529 |
agggaaccattgttcttgttttccaaccagcagaggaaggaggcggaggggctaagaaaattttagatgccggggcattagaaaatgtcactgctatctt |
5071430 |
T |
|
| Q |
324 |
tggattgcatgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggc |
423 |
Q |
| |
|
|||||||||| | | ||| || |||| | ||||||||| | || ||||| ||||| || | |||||| |||| |||||| ||||| |||||| || |
|
|
| T |
5071429 |
tggattgcatattgttcctgacttaccaattggtgaagtgtcctccaggtctggtccaatattggcaggaagtggattctttgaagcaaaaataagtgga |
5071330 |
T |
|
| Q |
424 |
aagggaggccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacgcgaggctg |
523 |
Q |
| |
|
|||||||| |||||||| | ||||||||| |||| || ||||| || || ||||| || |||| ||||| |||| || ||||||| |||||||||| |
|
|
| T |
5071329 |
aagggaggtcatgcagctattcctcaacaatctatagatcccatattagcagcttctggtgcgattattagcctacagcaccttgtttctcgcgaggctg |
5071230 |
T |
|
| Q |
524 |
atcc |
527 |
Q |
| |
|
|||| |
|
|
| T |
5071229 |
atcc |
5071226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 25928785 - 25928703
Alignment:
| Q |
185 |
tccttttatggatccgtgatctcattccttattttgcacagggaacgattgttcttgtttttcaaccggcagaagaaggaggt |
267 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
25928785 |
tccttttatggatccatgatatcattccttattttgtacagggaaatgttgttcttgtttttcaaccagccgaagaaggaggt |
25928703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 349 - 528
Target Start/End: Complemental strand, 25928589 - 25928402
Alignment:
| Q |
349 |
cctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaag--------ggaggccatgcagc |
440 |
Q |
| |
|
||||||||||| | |||| |||||| |||||||| ||||||||| |||| |||||| ||||||||||||| |||| | || || |||| ||| |
|
|
| T |
25928589 |
cctttaggtgacattgcatttaggtctggtcctattcttgcaggaagtggtttctttgaagcagtaataagcggcatgtggtggggggggggcatggagc |
25928490 |
T |
|
| Q |
441 |
caatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacgcgaggctgatccc |
528 |
Q |
| |
|
|| |||||| |||| | | ||||||||||||||||||| ||||| | | ||||||||||||| || ||||| ||||||| ||||||| |
|
|
| T |
25928489 |
cattcctcaccatgttctcaaccccattttggcggcttccaatgtaactattagcttacaacaaatagtttctcgcgaggttgatccc |
25928402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 25928699 - 25928633
Alignment:
| Q |
253 |
gcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgtctctgcca |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
25928699 |
gcagaagaaggaggtgttggggctaagaaaattttagaccctggaatcttggaaaatgtctctgcca |
25928633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 9419009 - 9419087
Alignment:
| Q |
233 |
ttgttcttgtttttcaaccggcagaagaaggaggtgccggggctaagaaaattttagattctggagccttagaaaatgt |
311 |
Q |
| |
|
||||||||||||| || || ||||| |||||||||| || ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
9419009 |
ttgttcttgttttccatccagcagacgaaggaggtgtaggagctaagaaaatattagattctagagcgttagaaaatgt |
9419087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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