View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18863_low_3 (Length: 597)

Name: NF18863_low_3
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18863_low_3
NF18863_low_3
[»] chr8 (1 HSPs)
chr8 (12-597)||(4367693-4368291)
[»] scaffold0040 (1 HSPs)
scaffold0040 (442-487)||(52527-52572)


Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 12 - 597
Target Start/End: Complemental strand, 4368291 - 4367693
Alignment:
Q  12 ataggggagttctgttcagtagagacacttacattgtcaaccatgatttcaacttgtatgttatgtctatgtacacttttactcgccgaatgtcacgtcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368291 ataggggagttctgttcagtagagacacttacattgtcaaccatgatttcaacttgtatgttatgtctatgtacacttttactcgccgaatgtcacgtcg 4368192  T
Q  112 gttttcaaaactgagtagaagagatgtacgaatgtacct--cgagattaaagaacattaatggctcaagacaacactccccggataagtcatattcccaa 209  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368191 gttttcaaaactgagtagaagagatgtacgaatgtaccctccgagattaaagaacattaatggctcaagacaacactccccggataagtcatattcccaa 4368092  T
Q  210 tcacgaatagggccattattggtcccggaattagctccagttagagctttaacagactgggggtgtcctttttcctgcctggcaaatcatgctaactaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368091 tcacgaatagggccattattggtcccggaattagctccagttagagctttaacagactgggggtgtcctttttcctgcctggcaaatcatgctaactaat 4367992  T
Q  310 aacaataaaaaaccaatggcatattcaccaccctcaaactagaaccaccacaggtaactctaaaccactagactgactttggggatctaattcacaggca 409  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4367991 aacaataaaaaaccaatggcatattcaccaccctcaaactaggaccaccacaggtaactctaaaccactagactgactttggggatctaattcacagaca 4367892  T
Q  410 gaattcctgctgacacattccaaaataaaaa---------attttgctattggtctagtcgtcaacacatactcatataa--acacacagggaggggaag 498  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4367891 gaattcctgctgacacattccaaaataaaaaataaaaaatattttgctattggtctagtcgtcaacacataatcatataaacacacacagggaggggaag 4367792  T
Q  499 cgtggtgaccaggaatgaacccaatattccacgtaaaatgtcctcatagccaaaccactgaaatttaactcgggattccttaatttcaaaaatatatac 597  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367791 cgtagtgaccaggaatgaacccaatattccacgtaaaatgtcctcatagccaaaccactgaaatttaactcgggattccttaatttcaaaaatatatac 4367693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 487
Target Start/End: Original strand, 52527 - 52572
Alignment:
Q  442 ttttgctattggtctagtcgtcaacacatactcatataaacacaca 487  Q
    |||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  52527 ttttgctattggcctagtggtcaacacatactcaaatagacacaca 52572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University