View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18863_low_5 (Length: 509)
Name: NF18863_low_5
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18863_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 375
Target Start/End: Complemental strand, 4367701 - 4367339
Alignment:
| Q |
13 |
aatatataccacaaaaactcactccacaagcaagacaaaatcacactcacattcacagtaaaaaagttcacaagtaacaaacaaatcacaatcatagaaa |
112 |
Q |
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| T |
4367701 |
aatatataccacaaaaactcactccacaagcaagacaaaatcacactcacattcacagtaaaaaagttcacaagtaacaaacaaatcacaatcatagaaa |
4367602 |
T |
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| Q |
113 |
taaacccacattaccaacaaaaatgaactgcgtgcaatttccccccatcaagctaccaaaacatgaaaaagcttaaaccataacaccaattcaaacaaca |
212 |
Q |
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| T |
4367601 |
taaacccacattaccaacaaaaatgaactgcgtgcaatttccccccatcaagccaccaaaacatgaaaaagcttaaaccataacaccaattcaaacaaca |
4367502 |
T |
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| Q |
213 |
atttacacatgcacnnnnnnnaacacaatttacacatgcacttaaaactaaaagataaacactagcatggaatcaaaaaatgaaccttttcaggaataac |
312 |
Q |
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| T |
4367501 |
atttacacatgcactttttttaacacaatttacacatgcacttaaaactaaaagataaacacttgcatggaatcaaaaaatgaaccttttcaggaataac |
4367402 |
T |
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| Q |
313 |
aaagccattgctatcttcttcaccagcattagccttatcaatgctatgaccaccacgattaaa |
375 |
Q |
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| T |
4367401 |
aaagccattgctatcttcttcaccagcattagccttatcaatgctatgaccaccacgattaaa |
4367339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 4367265 - 4367227
Alignment:
| Q |
452 |
gccacggcaacaacagcaactacgtcatcatttacctta |
490 |
Q |
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| T |
4367265 |
gccacggcaacaacagcaactacgtcatcatttacctta |
4367227 |
T |
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