View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18863_low_8 (Length: 363)

Name: NF18863_low_8
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18863_low_8
NF18863_low_8
[»] chr3 (7 HSPs)
chr3 (28-347)||(25805627-25805950)
chr3 (179-261)||(4506381-4506464)
chr3 (179-259)||(27900464-27900545)
chr3 (179-261)||(20628554-20628637)
chr3 (179-259)||(4501055-4501136)
chr3 (179-261)||(9331342-9331424)
chr3 (179-207)||(4644581-4644609)
[»] chr8 (10 HSPs)
chr8 (179-284)||(4435103-4435209)
chr8 (180-257)||(5064204-5064282)
chr8 (179-259)||(2268555-2268636)
chr8 (180-284)||(21693114-21693219)
chr8 (179-259)||(38657181-38657263)
chr8 (179-257)||(44246113-44246192)
chr8 (177-253)||(9907117-9907194)
chr8 (181-261)||(17993555-17993638)
chr8 (181-261)||(22226898-22226979)
chr8 (181-261)||(22233240-22233321)
[»] chr7 (8 HSPs)
chr7 (179-284)||(27954017-27954123)
chr7 (179-280)||(29865115-29865217)
chr7 (179-284)||(27950855-27950961)
chr7 (179-259)||(43364185-43364266)
chr7 (236-276)||(28969430-28969470)
chr7 (179-253)||(5222290-5222365)
chr7 (224-282)||(20404233-20404291)
chr7 (178-248)||(9701727-9701798)
[»] chr5 (5 HSPs)
chr5 (179-284)||(519628-519734)
chr5 (178-259)||(9335352-9335434)
chr5 (179-261)||(12919154-12919237)
chr5 (179-261)||(42729067-42729150)
chr5 (179-212)||(4694465-4694498)
[»] chr4 (6 HSPs)
chr4 (179-284)||(8847792-8847898)
chr4 (183-284)||(9416825-9416927)
chr4 (179-259)||(667876-667957)
chr4 (179-259)||(40976800-40976880)
chr4 (178-248)||(13567966-13568037)
chr4 (305-351)||(9416918-9416961)
[»] chr1 (4 HSPs)
chr1 (179-261)||(19329311-19329393)
chr1 (179-259)||(9315898-9315979)
chr1 (181-261)||(8995652-8995733)
chr1 (179-259)||(21814755-21814836)
[»] chr2 (3 HSPs)
chr2 (224-284)||(16105065-16105125)
chr2 (224-284)||(31758945-31759005)
chr2 (179-247)||(13031972-13032039)
[»] chr6 (5 HSPs)
chr6 (179-261)||(13105141-13105223)
chr6 (179-259)||(18765625-18765706)
chr6 (179-257)||(1051157-1051237)
chr6 (241-284)||(14354376-14354419)
chr6 (181-261)||(25977638-25977721)
[»] scaffold0012 (1 HSPs)
scaffold0012 (179-257)||(202338-202417)
[»] scaffold0265 (1 HSPs)
scaffold0265 (179-259)||(17973-18054)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 347
Target Start/End: Complemental strand, 25805950 - 25805627
Alignment:
Q  28 aaaaaagaaaattaggtgagatgaataaaaaatggatagctgacacgttgaaagacgaactaccaattttatgtacatcacttcattaaaaatagtttaa 127  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25805950 aaaaaaaaaaaaaaggtgagatgaataaaaaatggatagctgacacgttgaaagacgaactaccaattttatgtacatcacttcattaaaaatagtttaa 25805851  T
Q  128 caaatgaggtcccgtgttgaaaatcaatccatcaaagttgaagttagg--------cttgtatcaaaagtaagtatttttgttatcgttttcataggaat 219  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| ||         ||||||||||| ||||||||||||||||||| |||| ||| ||    
T  25805850 caaatgaggtccggtgttgaaaatccatccatcaaagttgaagttggggtaccgatgttgtatcaaaaataagtatttttgttatcgtcttcacagg-at 25805752  T
Q  220 tggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatgattgattcattttgttgaaataaaatgatgattgattgatta 319  Q
    |||||| |||||||| ||||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25805751 tggtgcaatattcaagccgttcaacaattgatatcgttctaaacttatagttcaaatgattcattcattttgttgaaataaaatgatgattgattgatta 25805652  T
Q  320 aaaacgactaatttaaattggaatatag 347  Q
    |||   |||||| |||||| ||||||||    
T  25805651 aaa---actaatctaaatttgaatatag 25805627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 4506381 - 4506464
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||||||||| | | || ||||||||||||||||||| || |||||||||||||  |||||||||||    
T  4506381 gtatcaaaagtaagtatttttgttatcatctccacaggaattggtgcgatattctaagccgttcaacaatcggtatcgttctaa 4506464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 27900464 - 27900545
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||| ||||||||||| || | | | ||||||||||||| || |||||||| |||| ||||||||||    
T  27900464 gtatcaaaagtaagtatttatgttatcgtttccacatggactggtgcgatattctaagccgttcaataatctatatcgttct 27900545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 20628637 - 20628554
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||||||||||| | || ||| | || |||| ||||| || || |||||||||| ||||||||||||    
T  20628637 gtatcaaaagtaagtatttttgttatcgtctccacaggtactgatgcggtattctaagccattcaacaatcgatatcgttctaa 20628554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 4501055 - 4501136
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||||||||||||| | || | | | | ||||||||||| || |||||||||||||  |||||||||    
T  4501055 gtatcaaaagtaagtatttttgttatcgtctccacatggactagtgcgatattctaagccgttcaacaatcagtatcgttct 4501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 9331424 - 9331342
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||||| ||||| | |||| | | || |||||||||| || || |||||||||| ||||||||||||    
T  9331424 gtatcaaaagtaagtatttttgtcatcgtctccatatg-actgatgcgatattctaagccattcaacaatcgatatcgttctaa 9331342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 4644609 - 4644581
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgt 207  Q
    |||||||||||||||||||||||||||||    
T  4644609 gtatcaaaagtaagtatttttgttatcgt 4644581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 4435103 - 4435209
Alignment:
Q  179 gtatcaaaagtaagtatttttgtt-atcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    |||||||||||||||||||||||  ||||| | || | | ||| | |||||||||||  |||||||||||| |||||| |||||||||||||||||||||    
T  4435103 gtatcaaaagtaagtatttttgtgcatcgtctccacaaggattagcgcgatattcaagtcgttcaacaatcgatatcgctctaaacttatggttcaaatg 4435202  T
Q  278 attgatt 284  Q
    |||||||    
T  4435203 attgatt 4435209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 5064282 - 5064204
Alignment:
Q  180 tatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgtt 257  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| || |||||||||||||  |||||||    
T  5064282 tatcaaaagtaagtatttttgttatcgtcttcacagggattggtgcgatattctaagccgttcaacaatcggtatcgtt 5064204  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 2268636 - 2268555
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||||||||||||| | |||||| | | ||||||||||| || |||||||||||||  |||||||||    
T  2268636 gtatcaaaagtaagtatttttgttatcgtctccatagggactagtgcgatattctaagccgttcaacaatcggtatcgttct 2268555  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 21693219 - 21693114
Alignment:
Q  180 tatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatga 278  Q
    |||||||||||||||||||||| |||||| | || | | | | | |||| |||||| |||||||||||||  ||||||| ||||||||| ||||||||||    
T  21693219 tatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgacattcaagccgttcaacaatcgttatcgttataaacttatagttcaaatga 21693120  T
Q  279 ttgatt 284  Q
    ||||||    
T  21693119 ttgatt 21693114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 38657181 - 38657263
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc--aaaccgttcaacaatccatatcgttct 259  Q
    |||| ||||||||||||||||||||| || |||||||||| |||||||||||||  || |||||||| ||||  |||||||||    
T  38657181 gtattaaaagtaagtatttttgttattgtcttcataggaactggtgcgatattcttaagccgttcaataatcggtatcgttct 38657263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 44246192 - 44246113
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgtt 257  Q
    ||||||||||||||||||| ||||||||| | || ||| | ||||||||||||| || ||||||||||||  ||||||||    
T  44246192 gtatcaaaagtaagtatttatgttatcgtctccacagggactggtgcgatattctaagccgttcaacaatatatatcgtt 44246113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 9907194 - 9907117
Alignment:
Q  177 ttgtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatatt-caaaccgttcaacaatccatat 253  Q
    ||||||||||||||||||||||||||||||| | || | | | ||||||||||||  || ||||||||||||| ||||    
T  9907194 ttgtatcaaaagtaagtatttttgttatcgtctccacatggactggtgcgatattataagccgttcaacaatcgatat 9907117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 17993638 - 17993555
Alignment:
Q  181 atcaaaagtaagtatttttgt---tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    |||||||||||||||||||||   |||||| | || ||||| | | ||||||||||| || |||||||||| |||| |||||||    
T  17993638 atcaaaagtaagtatttttgtgtatatcgtctccacaggaactagcgcgatattcaagccattcaacaatcaatattgttctaa 17993555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 22226898 - 22226979
Alignment:
Q  181 atcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||| |||||| | || ||| | | ||||||||||||| || || ||||||  ||||||||||||    
T  22226898 atcaaaagtaagtatttttgtgtatcgtctccacagggactagtgcgatattcaagccatttaacaattaatatcgttctaa 22226979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 22233240 - 22233321
Alignment:
Q  181 atcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||| |||||| | || ||| | | ||||||||||||| || || ||||||  ||||||||||||    
T  22233240 atcaaaagtaagtatttttgtgtatcgtctccacagggactagtgcgatattcaagccatttaacaattaatatcgttctaa 22233321  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 27954017 - 27954123
Alignment:
Q  179 gtatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    ||||||||||||||||||||||| |||||| |  | ||| | | | ||||||||||| |||||||||||||  ||||||||||||||||| |||||||||    
T  27954017 gtatcaaaagtaagtatttttgtgtatcgtctctagagggactagcgcgatattcaagccgttcaacaatcgttatcgttctaaacttatagttcaaatg 27954116  T
Q  278 attgatt 284  Q
    |||||||    
T  27954117 attgatt 27954123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 29865217 - 29865115
Alignment:
Q  179 gtatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    ||||||||||||||||||||||| |||||| | || | | | | |||||||||||||  |||||||||||| ||||||||||||||||||| ||||||||    
T  29865217 gtatcaaaagtaagtatttttgtgtatcgtctccacatggactagtgcgatattcaagtcgttcaacaatcgatatcgttctaaacttatgattcaaatg 29865118  T
Q  278 att 280  Q
    |||    
T  29865117 att 29865115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 27950855 - 27950961
Alignment:
Q  179 gtatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    ||||||||||||||||||||||| ||| |||| || ||  | | | ||||||||||| |||||||| ||||  ||||||||||||| ||| |||||||||    
T  27950855 gtatcaaaagtaagtatttttgtgtattgtttccacagagactagcgcgatattcaagccgttcaataatcgttatcgttctaaacatatagttcaaatg 27950954  T
Q  278 attgatt 284  Q
    |||||||    
T  27950955 attgatt 27950961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 43364185 - 43364266
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||| ||||||||| | || ||| | ||||||||||||| || ||||||||||||| ||||||||||    
T  43364185 gtatcaaaagtaagtatttatgttatcgtctccacagggactggtgcgatattctaagccgttcaacaatctatatcgttct 43364266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 28969430 - 28969470
Alignment:
Q  236 ccgttcaacaatccatatcgttctaaacttatggttcaaat 276  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  28969430 ccgttcaacaatcgatatcgttctaaacttatggttcaaat 28969470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 5222290 - 5222365
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatat 253  Q
    ||||||||||||||||||||||||||||| | || ||| | ||||||||||||| || || |||||||||| ||||    
T  5222290 gtatcaaaagtaagtatttttgttatcgtctccacagggactggtgcgatattctaagccattcaacaatcgatat 5222365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 20404291 - 20404233
Alignment:
Q  224 gcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatgattga 282  Q
    ||||||||| | ||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  20404291 gcgatattcgagccgttcagcaatcgatatcgttttaaacttatgattcaaatgattga 20404233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 9701727 - 9701798
Alignment:
Q  178 tgtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatc 248  Q
    |||||||||||||||||||||||||||  | | || ||| | ||||||||||||| || |||||||||||||    
T  9701727 tgtatcaaaagtaagtatttttgttattatctccacagggactggtgcgatattctaagccgttcaacaatc 9701798  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 519734 - 519628
Alignment:
Q  179 gtatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    |||| |||||||||||||||||| ||| || | || ||||| | | ||||||||||| |||||||||||||  ||||||||||||||||| |||||||||    
T  519734 gtattaaaagtaagtatttttgtgtatagtctccacaggaactagcgcgatattcaagccgttcaacaatcgttatcgttctaaacttatagttcaaatg 519635  T
Q  278 attgatt 284  Q
    |||||||    
T  519634 attgatt 519628  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 9335434 - 9335352
Alignment:
Q  178 tgtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    |||||||||||||||||||| ||||||||| | || ||| | |||||||||| || || ||||||||||||| |||| |||||    
T  9335434 tgtatcaaaagtaagtatttatgttatcgtctccacagggactggtgcgataatctaagccgttcaacaatctatattgttct 9335352  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 12919237 - 12919154
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttctaa 261  Q
    |||||||||||||||||||| |||||||| | || | | | ||||| ||||||| || || |||||||||| ||||||||||||    
T  12919237 gtatcaaaagtaagtattttcgttatcgtctccacatggactggtgtgatattctaagccattcaacaatcgatatcgttctaa 12919154  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 42729067 - 42729150
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||||||||||| | || ||| | |||||| |||||| ||  | |||||||||| |||| |||||||    
T  42729067 gtatcaaaagtaagtatttttgttatcgtctccacagggactggtgcaatattctaagtcattcaacaatcaatattgttctaa 42729150  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 4694498 - 4694465
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttca 212  Q
    ||||||||||||||||||||||||||||| ||||    
T  4694498 gtatcaaaagtaagtatttttgttatcgtcttca 4694465  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 8847792 - 8847898
Alignment:
Q  179 gtatcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatg 277  Q
    ||||||||||||||||||||||| |||||| | || | | | | | ||||||||||| |||||||||||||  ||||||||||||||||| |||||||||    
T  8847792 gtatcaaaagtaagtatttttgtgtatcgtctccacaaggactagcgcgatattcaagccgttcaacaatcgttatcgttctaaacttatagttcaaatg 8847891  T
Q  278 attgatt 284  Q
    |||||||    
T  8847892 attgatt 8847898  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 9416825 - 9416927
Alignment:
Q  183 caaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatgattg 281  Q
    ||||||||||||||||||| |||||| | |||||| | | |  |||||||||| |||||||||||||  |||| |||||||||||| |||||||||||||    
T  9416825 caaaagtaagtatttttgtgtatcgtctccatagggactagaacgatattcaagccgttcaacaatcgttatcattctaaacttatagttcaaatgattg 9416924  T
Q  282 att 284  Q
    |||    
T  9416925 att 9416927  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 667957 - 667876
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    |||||||||||||||||||||||||| || | |||||| | || |||||||||| || ||||||||||||| ||||||||||    
T  667957 gtatcaaaagtaagtatttttgttattgtctccatagggactgatgcgatattctaagccgttcaacaatcgatatcgttct 667876  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 40976880 - 40976800
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||| ||||||| | | || ||| | |||||||||||| || ||||||||||||| ||||||||||    
T  40976880 gtatcaaaagtaagtatttatgttatcttctccacagggactggtgcgatatttaagccgttcaacaatctatatcgttct 40976800  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 13567966 - 13568037
Alignment:
Q  178 tgtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatc 248  Q
    |||||||||||||||||||||||||||  | | || ||| | ||||||||||||| || |||||||||||||    
T  13567966 tgtatcaaaagtaagtatttttgttattatctccacagggactggtgcgatattctaagccgttcaacaatc 13568037  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 9416918 - 9416961
Alignment:
Q  305 atgattgattgattaaaaacgactaatttaaattggaatatagtgat 351  Q
    ||||||||||||||||||||   |||| |||||||||||||||||||    
T  9416918 atgattgattgattaaaaac---taatctaaattggaatatagtgat 9416961  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 19329311 - 19329393
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    |||||||||||||||||||||| |||||| | || ||| | ||||||||||||||| ||||||||||||| |||| |||||||    
T  19329311 gtatcaaaagtaagtatttttgctatcgtctccacagggactggtgcgatattcaagccgttcaacaatcgatattgttctaa 19329393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 9315898 - 9315979
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||| ||||||||| | || ||| | || |||||||||| ||  |||||||||||| ||||||||||    
T  9315898 gtatcaaaagtaagtatttatgttatcgtctccacagggactgatgcgatattctaagtcgttcaacaatctatatcgttct 9315979  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 8995652 - 8995733
Alignment:
Q  181 atcaaaagtaagtatttttgt-tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||| |||||| | || ||| | | | ||||||||||| || |||||||||| |||| |||||||    
T  8995652 atcaaaagtaagtatttttgtgtatcgtctccacagggactagcgcgatattcaagccattcaacaatcaatattgttctaa 8995733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 21814755 - 21814836
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||| |||| |||||||| | || ||| | ||||||||||||| |  ||||||||||||| |||| |||||    
T  21814755 gtatcaaaagtaagttttttagttatcgtctccacagggactggtgcgatattctacgccgttcaacaatctatattgttct 21814836  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 16105125 - 16105065
Alignment:
Q  224 gcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatgattgatt 284  Q
    |||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||||    
T  16105125 gcgatattcaaaccgttcaataatcgatattgttctaaacttatagttcaaatgattgatt 16105065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 31759005 - 31758945
Alignment:
Q  224 gcgatattcaaaccgttcaacaatccatatcgttctaaacttatggttcaaatgattgatt 284  Q
    ||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  31759005 gcgatattcaagccgttcaacaatcgttatcgttctaaacttatagttcaaatgattgatt 31758945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 13032039 - 13031972
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattcaaaccgttcaacaat 247  Q
    |||||| ||||||||||||||| |||||| ||||||   ||| |||||||||| || ||||||||||||    
T  13032039 gtatcataagtaagtatttttg-tatcgtcttcataaagattagtgcgatatttaagccgttcaacaat 13031972  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 13105141 - 13105223
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    ||||||||||||||||||||||||||||| | || | | | ||||| ||||||||| | ||||||||||| ||||||||||||    
T  13105141 gtatcaaaagtaagtatttttgttatcgtctccacatggactggtgtgatattcaagctgttcaacaatcaatatcgttctaa 13105223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 18765625 - 18765706
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||||||| ||||||||| | |||||| | | ||||||||||| || ||||||||||||| |||| |||||    
T  18765625 gtatcaaaagtaagtatttctgttatcgtctccatagggactagtgcgatattctaagccgttcaacaatctatattgttct 18765706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 1051157 - 1051237
Alignment:
Q  179 gtatcaaaagtaagtatttt-tgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgtt 257  Q
    |||||||||||||||||||| ||||||||| | |||||| | ||||||||||||| || |||||||||||||  |||||||    
T  1051157 gtatcaaaagtaagtattttttgttatcgtctccatagggactggtgcgatattctaagccgttcaacaatcagtatcgtt 1051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 14354376 - 14354419
Alignment:
Q  241 caacaatccatatcgttctaaacttatggttcaaatgattgatt 284  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||    
T  14354376 caacaatcgttatcgttctaaacttatagttcaaatgattgatt 14354419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 25977721 - 25977638
Alignment:
Q  181 atcaaaagtaagtatttttgt---tatcgttttcataggaattggtgcgatattcaaaccgttcaacaatccatatcgttctaa 261  Q
    |||||||||||||||||||||   |||||| | |||||| | | | ||||||||||| || |||||||||| |||| |||||||    
T  25977721 atcaaaagtaagtatttttgtgtatatcgtctccatagggactagcgcgatattcaagccattcaacaatcaatattgttctaa 25977638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 202338 - 202417
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgtt 257  Q
    ||||||||||||||||||| ||||||||| | || ||| | |||||||| |||| || | ||||||||||| ||||||||    
T  202338 gtatcaaaagtaagtatttatgttatcgtctccacagggactggtgcgacattctaagcggttcaacaatcgatatcgtt 202417  T

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Target: scaffold0265 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 18054 - 17973
Alignment:
Q  179 gtatcaaaagtaagtatttttgttatcgttttcataggaattggtgcgatattc-aaaccgttcaacaatccatatcgttct 259  Q
    ||||||||||||||| |||| |||||||| | || ||| | ||||||||||||| |  ||||||||||||| |||| |||||    
T  18054 gtatcaaaagtaagttttttagttatcgtctccacagggactggtgcgatattctacgccgttcaacaatctatattgttct 17973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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