View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18863_low_9 (Length: 363)

Name: NF18863_low_9
Description: NF18863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18863_low_9
NF18863_low_9
[»] chr7 (36 HSPs)
chr7 (1-332)||(12819705-12820036)
chr7 (1-131)||(19344565-19344695)
chr7 (13-132)||(19325974-19326093)
chr7 (52-132)||(660836-660916)
chr7 (275-330)||(19325740-19325795)
chr7 (51-132)||(14076678-14076759)
chr7 (51-132)||(14386706-14386787)
chr7 (23-132)||(19351058-19351167)
chr7 (49-128)||(19722016-19722095)
chr7 (60-119)||(19604465-19604524)
chr7 (276-325)||(19645452-19645501)
chr7 (51-116)||(22021392-22021457)
chr7 (51-132)||(29454092-29454173)
chr7 (74-132)||(18514776-18514834)
chr7 (51-132)||(19357910-19357991)
chr7 (46-131)||(29921983-29922068)
chr7 (51-119)||(1985957-1986025)
chr7 (68-132)||(6864796-6864860)
chr7 (71-119)||(19374776-19374824)
chr7 (40-132)||(24002188-24002280)
chr7 (51-103)||(29106814-29106866)
chr7 (60-119)||(18952907-18952966)
chr7 (60-119)||(18982954-18983013)
chr7 (60-119)||(18997600-18997659)
chr7 (45-108)||(21218721-21218784)
chr7 (45-112)||(35205933-35206000)
chr7 (50-132)||(29430990-29431072)
chr7 (334-363)||(12819662-12819691)
chr7 (277-322)||(20057832-20057877)
chr7 (18-111)||(22028595-22028688)
chr7 (280-317)||(22520056-22520093)
chr7 (51-116)||(29445661-29445726)
chr7 (214-247)||(29476163-29476196)
chr7 (51-132)||(29859454-29859535)
chr7 (46-119)||(29881251-29881324)
chr7 (40-132)||(24010372-24010464)
[»] chr6 (10 HSPs)
chr6 (13-132)||(24254415-24254534)
chr6 (51-119)||(6921352-6921420)
chr6 (53-119)||(6947882-6947948)
chr6 (62-132)||(17369675-17369745)
chr6 (46-132)||(20770645-20770731)
chr6 (277-330)||(24254184-24254237)
chr6 (51-119)||(6954521-6954589)
chr6 (62-119)||(6935220-6935277)
chr6 (41-114)||(6942974-6943047)
chr6 (51-114)||(14749397-14749460)
[»] chr5 (12 HSPs)
chr5 (13-129)||(29597544-29597660)
chr5 (18-129)||(29647643-29647754)
chr5 (17-129)||(29642325-29642437)
chr5 (60-132)||(18964819-18964891)
chr5 (266-322)||(29597333-29597389)
chr5 (266-325)||(29642598-29642657)
chr5 (51-132)||(28763894-28763975)
chr5 (51-112)||(24330908-24330969)
chr5 (276-325)||(29593979-29594028)
chr5 (276-325)||(29820964-29821013)
chr5 (276-325)||(29647929-29647978)
chr5 (329-358)||(29820919-29820948)
[»] chr4 (11 HSPs)
chr4 (46-130)||(53774835-53774919)
chr4 (41-132)||(53790543-53790634)
chr4 (51-133)||(3565744-3565826)
chr4 (46-132)||(11970971-11971057)
chr4 (275-316)||(53790819-53790860)
chr4 (51-133)||(3557726-3557808)
chr4 (46-132)||(11981672-11981758)
chr4 (45-114)||(35767012-35767081)
chr4 (60-112)||(1686294-1686346)
chr4 (39-127)||(8443448-8443536)
chr4 (43-135)||(19361434-19361526)
[»] chr1 (6 HSPs)
chr1 (46-132)||(39379050-39379136)
chr1 (54-112)||(4014974-4015032)
chr1 (46-119)||(4570922-4570995)
chr1 (46-119)||(10218980-10219053)
chr1 (51-112)||(21855392-21855453)
chr1 (40-132)||(4366484-4366576)
[»] chr2 (6 HSPs)
chr2 (51-132)||(18908798-18908879)
chr2 (51-132)||(18913546-18913627)
chr2 (51-132)||(18920754-18920835)
chr2 (74-132)||(14514923-14514981)
chr2 (51-105)||(20975558-20975612)
chr2 (282-322)||(21021047-21021087)
[»] chr3 (3 HSPs)
chr3 (275-325)||(25901042-25901092)
chr3 (60-132)||(3625743-3625815)
chr3 (278-325)||(25915060-25915107)
[»] chr8 (2 HSPs)
chr8 (53-105)||(29390288-29390340)
chr8 (277-327)||(27618720-27618770)
[»] scaffold0354 (1 HSPs)
scaffold0354 (60-132)||(7472-7544)
[»] scaffold0064 (1 HSPs)
scaffold0064 (52-112)||(24206-24266)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 12820036 - 12819705
Alignment:
Q  1 tgctgtattaagggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12820036 tgctgtattaagggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcctggact 12819937  T
Q  101 caattccttaaaatcagttgtcagaatcttcagagatatcgtgaattgttcccattatgtctttctgagaatggacatacactgatattactatgctctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12819936 caattccttaaaatcagttgtcagaatcttcagagatatcgtgaattgttcccattatgtctttctgagaatggacatacactgatattactatgctttg 12819837  T
Q  201 gaggaaatgatgtaattctctataatttgagagaaaatagagtagagaaatctagtggatatatatggtgtgatgccaaggattatgttgaaagtttggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12819836 gaggaaatgatgtaattctctataatttgagagaaaatagagtagagaaatctagtggatatacatggtgtgatgccaaggattatgttgaaagtttggc 12819737  T
Q  301 ttcaatttgttgaaagtgagtttctatatgtt 332  Q
    ||||||||||||||| |||||||||| |||||    
T  12819736 ttcaatttgttgaaactgagtttctacatgtt 12819705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 19344695 - 19344565
Alignment:
Q  1 tgctgtattaagggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggact 100  Q
    ||||||||| | |||| ||||||||||||||||||  |||||||  ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  19344695 tgctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggact 19344596  T
Q  101 caattccttaaaatcagttgtcagaatcttc 131  Q
    ||||| |||||||| |||| |||||||||||    
T  19344595 caatttcttaaaattagttttcagaatcttc 19344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 19326093 - 19325974
Alignment:
Q  13 ggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    ||||||||||||||||||||||    ||||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| | |||    
T  19326093 ggaccgcctttgtttttctcactatatcaagagaactcattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaa 19325994  T
Q  113 atcagttgtcagaatcttca 132  Q
    ||||||| ||||||| ||||    
T  19325993 atcagttttcagaatgttca 19325974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 660916 - 660836
Alignment:
Q  52 ttttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||| |||||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||| ||| ||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttca 660836  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 19325795 - 19325740
Alignment:
Q  275 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctatatg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  19325795 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtaagtttctttatg 19325740  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 14076678 - 14076759
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| ||| ||||||| |||| |||||||||||||||| | |||||||||||||| |||||||| |||| ||||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14076759  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 14386706 - 14386787
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| ||| ||||||| |||| |||||||||||||||| | |||||||||||||| |||||||| |||| ||||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14386787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 19351167 - 19351058
Alignment:
Q  23 tgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtc 122  Q
    |||||||||||||  ||||| || ||  |||||||| |||||||||||| |||||||||||||||  | |||||||||| |||||| ||||| |||| ||    
T  19351167 tgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 19351068  T
Q  123 agaatcttca 132  Q
    || |||||||    
T  19351067 aggatcttca 19351058  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 19722016 - 19722095
Alignment:
Q  49 ttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatc 128  Q
    |||||||||| ||||| |||||| ||||||||||||| || | ||||||||||||||||| |||||||||| | ||||||    
T  19722016 ttattttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtttttagaatc 19722095  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 19604524 - 19604465
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||||||| |||||||||||||||| | || |||||||||||||||||||| ||||    
T  19604524 tatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 19645501 - 19645452
Alignment:
Q  276 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  19645501 ccaaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttct 19645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 22021392 - 22021457
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatca 116  Q
    |||| ||| |||||||||||| ||| | |||||||||| |||||||||||||||| ||||||||||    
T  22021392 atttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaatca 22021457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 29454173 - 29454092
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||| |||||| ||||| | |||||||||||||| | ||||||||||||||| ||||||| |||| |||  |||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttca 29454092  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 18514834 - 18514776
Alignment:
Q  74 gaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||| |  |||||||||    
T  18514834 gaatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttca 18514776  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 19357910 - 19357991
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| ||| ||||| |||||| ||||||||||||| || | ||||||||||||||| | ||||| |||| |||| |||||||    
T  19357910 atttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttca 19357991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 29922068 - 29921983
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttc 131  Q
    |||| |||||||| |||||||||||| | ||||||| | |||| | |||||| |||||||||||| ||| |||| ||| |||||||    
T  29922068 aactgattttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattccttagaattagttatcaaaatcttc 29921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 1986025 - 1985957
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||| | ||||| |||| ||||||||| |||||| ||||||||||||||||  ||||||| ||||    
T  1986025 attttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagtt 1985957  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 6864860 - 6864796
Alignment:
Q  68 atgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| |||||||||||||||| | ||||||||||| ||||||||||  |||| ||| ||||||||    
T  6864860 atgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttca 6864796  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 19374776 - 19374824
Alignment:
Q  71 acggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  19374776 acggaatttggagttgaacggtcttggactcaatttcttaaaattagtt 19374824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 24002188 - 24002280
Alignment:
Q  40 caagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||||| | |||||| ||||||| |||| ||| |  |||||| || | |||||||||||||| ||||| || |||| ||||||||||||    
T  24002188 caagagaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24002280  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 29106814 - 29106866
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaa 103  Q
    ||||||||||||||||||||| | ||||||| |||||| | ||||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaa 29106866  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 18952966 - 18952907
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||||||| |||||||||||||||  | || |||||||| ||||||||||| ||||    
T  18952966 tatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtt 18952907  T

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Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 18983013 - 18982954
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||||||| |||||||||||||||  | || |||||||| ||||||||||| ||||    
T  18983013 tatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18982954  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 18997659 - 18997600
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||||||| |||||||||||||||  | || |||||||| ||||||||||| ||||    
T  18997659 tatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18997600  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 21218784 - 21218721
Alignment:
Q  45 gaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattcct 108  Q
    ||||| |||| ||| ||||||| |||||||||||||||| |||  | |||||||||||||||||    
T  21218784 gaactgatttggttatatggcaaatgacggaatttggagatgataagtcttggactcaattcct 21218721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 35206000 - 35205933
Alignment:
Q  45 gaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    ||||| |||||||| ||||| ||||||| |||||||||  |||  | |||||||||||||||||||||    
T  35206000 gaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggactcaattccttaaa 35205933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 29431072 - 29430990
Alignment:
Q  50 tattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||||| |||||| ||||| | ||||||| | | || | |||||||| |||||||||||||| |||| |||| |||||||    
T  29431072 tattttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttca 29430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 12819691 - 12819662
Alignment:
Q  334 gaatttatttgaattcatgtatgttgactt 363  Q
    ||||||||||||||||||||||||||||||    
T  12819691 gaatttatttgaattcatgtatgttgactt 12819662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 20057877 - 20057832
Alignment:
Q  277 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtt 322  Q
    |||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  20057877 caaggattatgttgaaagcttggcttcaacttgttgatagtaagtt 20057832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 22028595 - 22028688
Alignment:
Q  18 gcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaa 111  Q
    |||||||||||||| |  || |||||  |||  |||||||| ||||| | |||||||| | |||||||||| | |||||||||||||| |||||    
T  22028595 gcctttgtttttctgaagtggtcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaa 22028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 22520093 - 22520056
Alignment:
Q  280 ggattatgttgaaagtttggcttcaatttgttgaaagt 317  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  22520093 ggattatgttgaaagcttggtttcaatttgttgaaagt 22520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 29445726 - 29445661
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatca 116  Q
    ||||| || |||||||||||| |||||| || |||||| | |||||||||||||| || |||||||    
T  29445726 attttcttatatggcagatgaaggaattaggggttgaagactcttggactcaatttctaaaaatca 29445661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 29476196 - 29476163
Alignment:
Q  214 aattctctataatttgagagaaaatagagtagag 247  Q
    |||||||||||||| |||||||||||||||||||    
T  29476196 aattctctataattggagagaaaatagagtagag 29476163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 29859454 - 29859535
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| ||| ||||| |||||| | |||||||||||||| | |||||||| | ||| |||||||| |||| ||| ||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttca 29859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 29881251 - 29881324
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||| ||||| |||| ||||| |||| | ||||||| |||||| | ||||||||||||||||||| ||| ||||    
T  29881251 aactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtt 29881324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 24010372 - 24010464
Alignment:
Q  40 caagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||||| | |||||| ||||||| |||| ||| |  || ||| || | |||||||||||||| ||||| || |||| ||||||||||||    
T  24010372 caagagaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24010464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 24254534 - 24254415
Alignment:
Q  13 ggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    |||| |||||||||||||||||    ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | |||    
T  24254534 ggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactcaattcatcaaa 24254435  T
Q  113 atcagttgtcagaatcttca 132  Q
    ||||||| | ||||| ||||    
T  24254434 atcagttttgagaatgttca 24254415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 6921420 - 6921352
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||| | ||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 6947948 - 6947882
Alignment:
Q  53 tttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||| | ||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6947948 tttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagtt 6947882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 17369675 - 17369745
Alignment:
Q  62 tggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||| |||| |||||||||||||||| | |||||||||||||| |||||||| |||| ||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 17369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 20770645 - 20770731
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||||||||| ||||||| |||| |||||||||| ||||| | || |||| ||||||||||||||| |||| ||| ||||||||    
T  20770645 aacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttca 20770731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 24254237 - 24254184
Alignment:
Q  277 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctatatg 330  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||    
T  24254237 caaggattacgttgaaagtttggcttcaatttgttgaaaataagtttctttatg 24254184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 6954589 - 6954521
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||||||| | ||||| |||| |||||||||||||||| ||||||||||||||||  ||||||| ||||    
T  6954589 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 6954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 6935277 - 6935220
Alignment:
Q  62 tggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    ||||| |||| ||||||||||||| || ||||||||||| ||||||||||||| ||||    
T  6935277 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 6935220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 6943047 - 6942974
Alignment:
Q  41 aagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaat 114  Q
    |||| ||| ||||||||| | | ||| |||| |||||||||||||||| |||||| ||| ||||||||||||||    
T  6943047 aagaaaacctattttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaat 6942974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 14749397 - 14749460
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaat 114  Q
    |||||||| |||||  ||||| ||||||||||||| || | ||||||||||||||||| |||||    
T  14749397 attttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaat 14749460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 29597660 - 29597544
Alignment:
Q  13 ggaccgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    ||||||||||||||||||||||    |||||  |||| |||||||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  29597660 ggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaa 29597561  T
Q  113 atcagttgtcagaatct 129  Q
    || |||| ||| |||||    
T  29597560 attagttttcaaaatct 29597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 29647643 - 29647754
Alignment:
Q  18 gcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcag 117  Q
    |||||||||||||||||   || |||| |||| |||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||| ||    
T  29647643 gcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattag 29647742  T
Q  118 ttgtcagaatct 129  Q
    || ||| |||||    
T  29647743 ttttcaaaatct 29647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 29642325 - 29642437
Alignment:
Q  17 cgcctttgtttttctcacatgctcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatca 116  Q
    ||||||||||||||||||   |  |||| |||| |||| ||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||| |    
T  29642325 cgcctttgtttttctcaccatcgtaagaaaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaatta 29642424  T
Q  117 gttgtcagaatct 129  Q
    ||| |||||||||    
T  29642425 gttttcagaatct 29642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 18964891 - 18964819
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||| |||| |||||||||||||||| | |||||||||||||| ||||||||  ||| ||||||||||||    
T  18964891 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 18964819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 29597389 - 29597333
Alignment:
Q  266 tggtgtgatgccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtt 322  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  29597389 tggtgttattccaaggattatgttgaaagtttggcttcgatttgttgaaagtaagtt 29597333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 29642598 - 29642657
Alignment:
Q  266 tggtgtgatgccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    |||||| || |||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  29642598 tggtgttattccaaggattatgttgaaagtttggcttggatttgttgaaagtaagtttct 29642657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 28763975 - 28763894
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||| ||||| |||||||| |||||||||||||| | ||||||| || |||||| |||||||| | |||| |||||||    
T  28763975 attttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttca 28763894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 24330969 - 24330908
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    |||||||| ||||| |||||| ||||||||| |||||| | |||||||||||| ||||||||    
T  24330969 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaa 24330908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 29594028 - 29593979
Alignment:
Q  276 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    ||||||||||| |||||||||||||||| |||| |||||||| |||||||    
T  29594028 ccaaggattattttgaaagtttggcttcgatttcttgaaagtaagtttct 29593979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 29821013 - 29820964
Alignment:
Q  276 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    |||||||||||||||||||||| ||||  ||||||||||||| |||||||    
T  29821013 ccaaggattatgttgaaagtttagcttggatttgttgaaagtaagtttct 29820964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 29647929 - 29647978
Alignment:
Q  276 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    ||||||||| |||||||| ||||||||  ||||||||||||| |||||||    
T  29647929 ccaaggattgtgttgaaaatttggcttggatttgttgaaagtaagtttct 29647978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 358
Target Start/End: Complemental strand, 29820948 - 29820919
Alignment:
Q  329 tgttcgaatttatttgaattcatgtatgtt 358  Q
    ||||||||||||||||||||||||||||||    
T  29820948 tgttcgaatttatttgaattcatgtatgtt 29820919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 53774835 - 53774919
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatctt 130  Q
    |||| |||||||| ||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||    
T  53774835 aactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 53790543 - 53790634
Alignment:
Q  41 aagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||||| ||||| || ||||| |||||||  |||||||| |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  53790543 aagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttca 53790634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 3565744 - 3565826
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttcag 133  Q
    ||||| || |||||||||||| ||||||||| |||||| | |||||||||||||| |||||||| |||| |||  ||||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttcag 3565826  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 11971057 - 11970971
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| |||||||| ||||||| |||| |||||||||||| ||| | |||||||||||||| |||| ||| |||| ||| ||||||||    
T  11971057 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttca 11970971  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 53790819 - 53790860
Alignment:
Q  275 gccaaggattatgttgaaagtttggcttcaatttgttgaaag 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  53790819 gccaaggattatgttgaaagtttggcttcaattcgttgaaag 53790860  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 3557726 - 3557808
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttcag 133  Q
    ||||| || ||||||| |||| ||||||||| |||||| | |||||||||||||| |||||||| |||| |||  ||||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttcag 3557808  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 11981758 - 11981672
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| |||||||| ||||||| |||| |||||||||||| ||| | || ||||||| ||| |||||||| |||| ||  ||||||||    
T  11981758 aactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttca 11981672  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 35767012 - 35767081
Alignment:
Q  45 gaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaat 114  Q
    ||||| |||||||| ||||| |||||   ||||||||||||||| | ||||||| |||| ||||||||||    
T  35767012 gaactcattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaat 35767081  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 1686346 - 1686294
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    |||||||||||| ||||||||| |||||  | |||||||||||||| ||||||    
T  1686346 tatggcagatgaaggaatttggcgttgacgagtcttggactcaatttcttaaa 1686294  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 8443536 - 8443448
Alignment:
Q  39 tcaagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaat 127  Q
    ||||||||||| ||| |||| | |||||||||| ||| ||||||||| |  | ||||||| ||||||  ||||||| |||| |||||||    
T  8443536 tcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagttatcagaat 8443448  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 19361434 - 19361526
Alignment:
Q  43 gagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttcagag 135  Q
    |||||||||||||||| ||||| |||||    |||||| ||||||| | | |||||||||| || ||||||| || | ||| |||||||||||    
T  19361434 gagaacttattttgttatatggaagatggaataatttgaagttgaagagttttggactcaactcattaaaattaggtatcaaaatcttcagag 19361526  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 39379136 - 39379050
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||| ||||| || |||||||||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| |||  |||||||    
T  39379136 aactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttca 39379050  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 4015032 - 4014974
Alignment:
Q  54 ttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    ||||| |||||||||||| | ||||||| |||||| | |||||||||||||||||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaa 4014974  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 4570922 - 4570995
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||| |||||||| ||||||| |||| | ||||||| |||||| | |||||||||||||| |||||||| ||||    
T  4570922 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 4570995  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 10218980 - 10219053
Alignment:
Q  46 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagtt 119  Q
    |||| |||||||||||||||| |||| | |||||||  ||||| | |||||||||||||| |||||||| ||||    
T  10218980 aactgattttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtt 10219053  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 21855453 - 21855392
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    |||||||| ||||| |||||| ||||||||| |||||| | |||||||||||| ||||||||    
T  21855453 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaa 21855392  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 4366576 - 4366484
Alignment:
Q  40 caagagaacttattttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||| |||| |||||||| |||||||||||| | |||| || |||||| | |||||||||| ||| |||||| | ||||  |||||||||||    
T  4366576 caagaaaactgattttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttca 4366484  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 18908879 - 18908798
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||| ||||| |||||| ||||||||||||| || | ||||||||||||||||| ||||| |||| ||| ||||||||    
T  18908879 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18908798  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 18913627 - 18913546
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||| ||||| |||||| ||||||||||||| || | ||||||||||||||||| ||||| |||| ||| ||||||||    
T  18913627 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18913546  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 18920835 - 18920754
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    |||||||| ||||| |||||| ||||||||||||| || | ||||||||||||||||| ||||| |||| ||| ||||||||    
T  18920835 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18920754  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 14514923 - 14514981
Alignment:
Q  74 gaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||| |  |||||||||    
T  14514923 gaatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttca 14514981  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 20975558 - 20975612
Alignment:
Q  51 attttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaatt 105  Q
    |||||||| ||||||| |||| |||||||||||||||| | ||||||| ||||||    
T  20975558 attttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt 20975612  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 21021087 - 21021047
Alignment:
Q  282 attatgttgaaagtttggcttcaatttgttgaaagtgagtt 322  Q
    |||||||||||||||||| ||||| ||||||||||| ||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 21021047  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 25901092 - 25901042
Alignment:
Q  275 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    ||||||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  25901092 gccaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25901042  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 3625743 - 3625815
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||| |||| | ||||||| |||||| | |||||||||||||| |||||||| |||| ||| ||||||||    
T  3625743 tatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttca 3625815  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 25915107 - 25915060
Alignment:
Q  278 aaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 325  Q
    |||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  25915107 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25915060  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  53 tttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaatt 105  Q
    |||||| |||||||||||| |||||||||||||||| ||||||| ||| ||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 27618720 - 27618770
Alignment:
Q  277 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctat 327  Q
    |||||||||||||||||| |||| |||||||| |||||||| |||| ||||    
T  27618720 caaggattatgttgaaagcttggtttcaatttcttgaaagtaagttcctat 27618770  T

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Target: scaffold0354 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 7472 - 7544
Alignment:
Q  60 tatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaaatcagttgtcagaatcttca 132  Q
    ||||||| |||| |||||||||||||||  | ||||||  ||||||||||||||| || | || |||||||||    
T  7472 tatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattagctatcggaatcttca 7544  T

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Target: scaffold0064 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 24206 - 24266
Alignment:
Q  52 ttttgttgtatggcagatgacggaatttggagttgaacaatcttggactcaattccttaaa 112  Q
    ||||||| ||||| ||||||| |||| ||||| |||| | ||||| |||||||||||||||    
T  24206 ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaa 24266  T

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