View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_high_10 (Length: 363)
Name: NF18864_high_10
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 54724445 - 54724793
Alignment:
| Q |
1 |
taaacaatagtaaaataaataaagtagacacatgaagtagctatgtgacagaactatctatcacacagccacaattgttatttatctctgattctgaata |
100 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
54724445 |
taaacattagtaaaataaataaaatagacacatgaagtagctatgtgacagaactatctaccacatagccacaattgttatttatctctgattctgaata |
54724544 |
T |
|
| Q |
101 |
caatgcttagctcatgtggtttgtcagctcactatgacttatggaggagctaagagtaaattgannnnnnnnccacacatacataaaaatatgctattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54724545 |
caatgcttagctcatgtggtttgtcagctcactatgacttatggaggagctaagagtaaattgattttttt-ccacacatacataaaaatatgctattat |
54724643 |
T |
|
| Q |
201 |
tagcccatggtataagaagggcttggcaagtttatcacggtagttttgatttttgtcatcatgtttatgctgttggtaattccttgtgatccaattccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54724644 |
tagcccatggtataagaagggcttggcaagtttatcacggtagttttgatttttgtcatcatgtttatgctgttggtaattccttgtgatccaattccac |
54724743 |
T |
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| Q |
301 |
tgtcttttataccctgtcaataggaaaacatttgatagtatgagacatgt |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54724744 |
tgtcttttataccctgtcaataggaaaacatttgatagtatgagacatgt |
54724793 |
T |
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