View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_high_13 (Length: 328)
Name: NF18864_high_13
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 42343441 - 42343296
Alignment:
| Q |
27 |
ggaaaagaatgagctaaaatgctacattattatccttttaaaatagtttcatcttcaaaactaggtagtataaaagattaagatagagttcattcactta |
126 |
Q |
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| T |
42343441 |
ggaaaagaatgagctaaaatgttacattattaccctcttaaaatagtttcatcttcaaaactaagcagtataaaagattaaggtagagttcattcactta |
42343342 |
T |
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| Q |
127 |
aataagatcatatgatactagaatcattttatcaaaaagaatggag |
172 |
Q |
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| T |
42343341 |
aataaaatcatatgataatagaatcattttatcaaaaagaatggag |
42343296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 42343233 - 42343156
Alignment:
| Q |
235 |
gggctttacactaaactttatcaaacaataaaagccacaaaacatgtgctctatagtttttgaaatgcaaatcaattt |
312 |
Q |
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| T |
42343233 |
gggctttacactaagctttatcaaacaataaaagcaacaaaacatgtgctctataggttttgaaatgcaaatcaattt |
42343156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 19545846 - 19545891
Alignment:
| Q |
124 |
ttaaataagatcatatgatactagaatcattttatcaaaaagaatg |
169 |
Q |
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| T |
19545846 |
ttaaataagatcatatgatactagaatcaattcattaaaaggaatg |
19545891 |
T |
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