View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18864_high_14 (Length: 277)

Name: NF18864_high_14
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18864_high_14
NF18864_high_14
[»] chr8 (2 HSPs)
chr8 (8-163)||(32855081-32855236)
chr8 (66-129)||(5424781-5424844)
[»] chr4 (2 HSPs)
chr4 (66-134)||(53130870-53130937)
chr4 (19-57)||(41103956-41103994)
[»] chr1 (2 HSPs)
chr1 (66-134)||(43114754-43114822)
chr1 (19-53)||(46148885-46148919)
[»] chr7 (4 HSPs)
chr7 (66-129)||(5801064-5801127)
chr7 (19-57)||(5801143-5801181)
chr7 (19-57)||(28974898-28974936)
chr7 (19-57)||(44434781-44434819)
[»] chr6 (1 HSPs)
chr6 (19-57)||(21980864-21980902)
[»] chr5 (1 HSPs)
chr5 (66-129)||(35040426-35040489)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 32855081 - 32855236
Alignment:
Q  8 gatttaataatatctattttgtgtttgttttccgtaacaaaaatcactttnnnnnnngttagattgtttggctacaactatataaaagagannnnnnngt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||| ||||| |||||||||||||       ||    
T  32855081 gatttaataatatctattttgtgtttgttttccgtaacaaaaatcaatttaaaaaaagttagattgtttggttacaattatataaaagagatttttttgt 32855180  T
Q  108 tacaaaattagttcaatcttttgacccttannnnnnnctcttctctaaaaaatcta 163  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  32855181 tacaaaattagttcaatcttttgacccttatttttttctcttctctaaaaaatcta 32855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 5424781 - 5424844
Alignment:
Q  66 ttagattgtttggctacaactatataaaagagannnnnnngttacaaaattagttcaatctttt 129  Q
    |||| |||||||| |||||||||||||||| ||       ||||||||||||||||||||||||    
T  5424781 ttagtttgtttggatacaactatataaaagggatttttttgttacaaaattagttcaatctttt 5424844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 53130937 - 53130870
Alignment:
Q  66 ttagattgtttggctacaactatataaaagagannnnnnngttacaaaattagttcaatcttttgaccc 134  Q
    |||| |||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||    
T  53130937 ttagtttgtttggatacaactatataaaagagatttttt-gttacaaaattagttcaatcttttgaccc 53130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 41103956 - 41103994
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatcacttt 57  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  41103956 atctattttgtgtttgtttacggtaacaaaaatcacttt 41103994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 43114754 - 43114822
Alignment:
Q  66 ttagattgtttggctacaactatataaaagagannnnnnngttacaaaattagttcaatcttttgaccc 134  Q
    |||| |||||||| || ||||||||||||||||       ||| |||||||||||||||||||||||||    
T  43114754 ttagtttgtttggatataactatataaaagagatttttttgttgcaaaattagttcaatcttttgaccc 43114822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 46148919 - 46148885
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatca 53  Q
    ||||||||||||||||||| |||||||||||||||    
T  46148919 atctattttgtgtttgtttaccgtaacaaaaatca 46148885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 5801127 - 5801064
Alignment:
Q  66 ttagattgtttggctacaactatataaaagagannnnnnngttacaaaattagttcaatctttt 129  Q
    |||| |||||||| |||||||||||||||||||       ||||||||||||||||||| ||||    
T  5801127 ttagtttgtttggatacaactatataaaagagatttttttgttacaaaattagttcaatatttt 5801064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 5801181 - 5801143
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatcacttt 57  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  5801181 atctattttgtgtttgtttaccgtaataaaaatcacttt 5801143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 28974898 - 28974936
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatcacttt 57  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  28974898 atctattttgtgtttgttttccataataaaaatcacttt 28974936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 44434819 - 44434781
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatcacttt 57  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  44434819 atctattttgtgtttgtttaccgtaataaaaatcacttt 44434781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 21980864 - 21980902
Alignment:
Q  19 atctattttgtgtttgttttccgtaacaaaaatcacttt 57  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  21980864 atctattttgtgtttgtttaccgtaataaaaatcacttt 21980902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 35040489 - 35040426
Alignment:
Q  66 ttagattgtttggctacaactatataaaagagannnnnnngttacaaaattagttcaatctttt 129  Q
    |||| |||||||| |||||||||||||||| ||       ||||||||||||||||||||||||    
T  35040489 ttagtttgtttggatacaactatataaaagggaattttttgttacaaaattagttcaatctttt 35040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University