View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_high_18 (Length: 244)
Name: NF18864_high_18
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 44376033 - 44375958
Alignment:
| Q |
157 |
ctatttgggcctccatgttttgttctgttattttattcctccaaaagtaatttgaataataaaacatctttatatt |
232 |
Q |
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| T |
44376033 |
ctatttgggcctccatgttttgttctgttattttattcctccaaaagtaatttgaataataaaacatctttatatt |
44375958 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44376189 - 44376127
Alignment:
| Q |
1 |
tcatcggttgtgttcccggttcatggaaatgtttaccctgttgggtacgtaaaaggaacttcc |
63 |
Q |
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| T |
44376189 |
tcatcggttgtgttcccggttcatggaaatgtttaccctgttgggtacgtaaaaggaacttcc |
44376127 |
T |
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