View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18864_high_20 (Length: 226)

Name: NF18864_high_20
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18864_high_20
NF18864_high_20
[»] chr5 (2 HSPs)
chr5 (72-210)||(18929491-18929628)
chr5 (112-178)||(6055409-6055475)
[»] chr1 (5 HSPs)
chr1 (82-185)||(23326484-23326587)
chr1 (84-178)||(48198388-48198482)
chr1 (84-178)||(48207044-48207138)
chr1 (84-178)||(20112116-20112210)
chr1 (94-174)||(17566255-17566335)
[»] chr7 (1 HSPs)
chr7 (84-178)||(12894743-12894837)
[»] chr6 (2 HSPs)
chr6 (84-178)||(7103967-7104061)
chr6 (84-178)||(8790569-8790663)
[»] chr4 (1 HSPs)
chr4 (84-178)||(38234044-38234138)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 18929628 - 18929491
Alignment:
Q  72 ttaagtaatgtttctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataatta 171  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  18929628 ttaagtaatgtttctccacatatctaaacctatattattcctccataaattagcattttctcatttttactcttgtgtttgaacaatggattaataatta 18929529  T
Q  172 ttgtcttattgaatggggtaacaccaaagacgaagactt 210  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  18929528 ttgtcttattgaa-cgggtaacaccaaagacgaagactt 18929491  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 6055409 - 6055475
Alignment:
Q  112 ctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| || | | ||||||||||| || ||||||||||| ||||  |||||||||||||||||    
T  6055409 ctccataaactaacctattctcgtttttgctattgtgtttgaataatgagttcataattattgtctt 6055475  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 23326587 - 23326484
Alignment:
Q  82 tttctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtcttatt 181  Q
    ||||||||||||||| ||||||||  | | |||||||||||||||| ||||||||||| |||||||||||||| | ||  |||||||||||||||||| |    
T  23326587 tttctccacatgtctgaacctataccagtcctccataaattagcatcttctcgtttttgctcttgtgtttgaatattgagttcataattattgtcttagt 23326488  T
Q  182 gaat 185  Q
    ||||    
T  23326487 gaat 23326484  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 48198482 - 48198388
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| |||||||||| |||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  48198482 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 48198388  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 48207138 - 48207044
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| |||||||||| |||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  48207138 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 48207044  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 20112116 - 20112210
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||| ||| ||| ||||||||||| | ||||||| |||||||| |||||||| |  |||||||||||||||| ||  |||||||||||||||||    
T  20112116 tctccgcatatctgaacctatattagtcctccatagattagcatcttctcgttctcgctcttgtgtttgaacattgagttcataattattgtctt 20112210  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 17566335 - 17566255
Alignment:
Q  94 tctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattg 174  Q
    |||||||||||| || ||| |||||||||||||| |||||||   | |||||||||||||||| ||| |||||||||||||    
T  17566335 tctaaacctatactagttcaccataaattagcatcttctcgtaactgctcttgtgtttgaacattggcttcataattattg 17566255  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 12894743 - 12894837
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| ||||||||||||||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  12894743 tctccacatatctaaacctatattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 12894837  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 7104061 - 7103967
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| |||||||||| |||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  7104061 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 7103967  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 8790569 - 8790663
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| |||||||||| |||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  8790569 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 8790663  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 38234138 - 38234044
Alignment:
Q  84 tctccacatgtctaaacctatattatttctccataaattagcattttctcgtttttactcttgtgtttgaacaatggattcataattattgtctt 178  Q
    ||||||||| |||||||||| |||| | ||||||| |||||||| |||||||| || |||||||||||||||| ||  ||||| |||||||||||    
T  38234138 tctccacatatctaaacctaaattagtcctccatatattagcatcttctcgttcttgctcttgtgtttgaacattgagttcatcattattgtctt 38234044  T

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