View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_high_7 (Length: 414)
Name: NF18864_high_7
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 28226102 - 28226485
Alignment:
| Q |
16 |
atgaaaagggttggtagattaattgacaagtatttgagagagatatcacctgatcagaacctaaagatctctaaatttcttggagttgcagaatgtttgc |
115 |
Q |
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| T |
28226102 |
atgaaaagggttggtagattaattgacaagtatttgagagagatatcacctgatcagaacctaaagatctctaaatttcttggagttgcagaatgtttgc |
28226201 |
T |
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| Q |
116 |
ctgattctgcaagggattgctttgatggggtctacaaagccattgatatctatcttgaggtgaatttcacatgccctttttccattcattttcatatgca |
215 |
Q |
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| T |
28226202 |
ctgattctgcaagggattgctttgatggggtctacaaagccattgatatctatcttgaggtgaatttcacatgccctttttccattcattttcatatgca |
28226301 |
T |
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| Q |
216 |
tcatattctaaagaatcataagaaatcgaaaagagcagatgcataaataacttcttttcccattcctagtgaactcttgcctttctgaaatctgcatttt |
315 |
Q |
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| T |
28226302 |
tcatattctaaagaatcataagaaatcgaaaagagcagatgcataaataacttcttttcccattcctagtgaactcttgcctttctgaaatctgcatttt |
28226401 |
T |
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| Q |
316 |
cttataatgacgtatattctttttcaagttctccacagccacactcatatttgtgtcatatattttggtctgaggcgatcactg |
399 |
Q |
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| T |
28226402 |
cttataatgacgtatattctttttcaagttttccacagccacactcatatttgtgtcatatattttggtctgaggccatcactg |
28226485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 13040526 - 13040378
Alignment:
| Q |
32 |
gattaattgacaagtatttgagagagatatcacctgatcagaacctaaagatctctaaatttcttggagttgcagaatgtttgcctgattctgcaaggga |
131 |
Q |
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||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||| || | ||||| ||||||||||||||||| ||||||||| |
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| T |
13040526 |
gattaattgacaagtatttgatagaaatatctcctgatcagaaccttgagatctctaaattcctagaagttgtagaatgtttgcctgattttgcaaggga |
13040427 |
T |
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| Q |
132 |
ttgctttgatggggtctacaaagccattgatatctatcttgaggtgaat |
180 |
Q |
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|||||||||||||||||| | ||||||||| ||||| |||||||||||| |
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| T |
13040426 |
ttgctttgatggggtctatagagccattgacatctaccttgaggtgaat |
13040378 |
T |
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