View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_high_9 (Length: 402)
Name: NF18864_high_9
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 23496131 - 23496509
Alignment:
| Q |
1 |
ctaaaaaatttaattttcattgttcagttgttttagttggaatcagacctattaagttattatgtgataaatcgaaaaaagaaagaagagtcaaatatat |
100 |
Q |
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| T |
23496131 |
ctaaaaaatttaattttcattgttcagttgttttagttggaatcagacctattaagttattatatgataaatcaaaaaaagaaagaagagtcaaatatat |
23496230 |
T |
|
| Q |
101 |
cagtgatgatggaatttgtcctcca---ttgttagtggaatgtacaatttttagagtcgccctatcccataacaaccgggacagactctaaccctttgca |
197 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23496231 |
cagtgatgatggaatttgtcctccaaggttgttattggaatgtacaatttttagagtcgccctctcccataacaaccgggacagactctaaccctttgca |
23496330 |
T |
|
| Q |
198 |
gaatcagccgcctttgcggcaagggcattcgcaatctccagagggacgactctgtcatcaccacaaggttgttcctcctccaccacgggaacagcaggag |
297 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496331 |
gaatcagccgcctttgcggcaagg------gcaatctccggagggacgactctgtcatcaccacaaggttgttcctcctccaccacgggaacagcaggag |
23496424 |
T |
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| Q |
298 |
tgttcatctcctccttcatggcctccaacatactcaacagaaccaccgaatatgcacaaaaacaaagtaaaagtcaaacgacagc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496425 |
tgttcatctcctccttcatggcctccaacatactcaacagaaccaccgaatatgcacaaaaacaaagtaaaagtcaaacgacagc |
23496509 |
T |
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