View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_low_1 (Length: 578)
Name: NF18864_low_1
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 386 - 565
Target Start/End: Original strand, 8394311 - 8394480
Alignment:
| Q |
386 |
ttatatgtggtcaagaaaaacatttctccttaaatgtgtagcattacaatacgcaaagataggagtgagtgagtattacataagttttgattttagtggg |
485 |
Q |
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| T |
8394311 |
ttatatgtggccaagaaaaacatttctccttaaatgtgtagcattacaatacgcaaagataggagtgagtgagtattacataagttttgatttta----- |
8394405 |
T |
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| Q |
486 |
ttaataataaagttgaagcaatggaatcaagtggttgatgtttccattctcttgaagcctctttttcattgtctcctcct |
565 |
Q |
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| T |
8394406 |
-----cattctcttgaagcaatggaatcaagtggttgatgtttccattctcttgaagcctctttttcattgtctcctcct |
8394480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 8394016 - 8394160
Alignment:
| Q |
100 |
gattagaaaagtgatgggcgtagcttgttttccagaaatttcttctttcttccagaaataacaaagtannnnnnnnnagtctttaattgattcaattgaa |
199 |
Q |
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| T |
8394016 |
gattagaaaagtgatgggcgtagcttgttttccagaaatttcttctttcttccagaaataacaaagtatttttttttagtctttaattgattcaattgaa |
8394115 |
T |
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| Q |
200 |
ttgaatttgttcatcaatggaaataaataaagaaaattcaacttc |
244 |
Q |
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| T |
8394116 |
ttgaatttgttcatcaatggaaataaataaagaaaattcaacttc |
8394160 |
T |
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