View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18864_low_11 (Length: 359)

Name: NF18864_low_11
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18864_low_11
NF18864_low_11
[»] chr8 (19 HSPs)
chr8 (203-344)||(32850236-32850377)
chr8 (46-192)||(13831874-13832025)
chr8 (46-192)||(34604779-34604930)
chr8 (46-192)||(35583881-35584032)
chr8 (46-192)||(29690434-29690585)
chr8 (47-192)||(45372704-45372854)
chr8 (46-192)||(7548496-7548648)
chr8 (46-177)||(44579907-44580043)
chr8 (46-192)||(43932048-43932199)
chr8 (46-178)||(43292566-43292703)
chr8 (46-132)||(34745255-34745341)
chr8 (46-192)||(43409833-43409984)
chr8 (135-181)||(8242148-8242194)
chr8 (56-132)||(9633089-9633165)
chr8 (144-192)||(34745256-34745304)
chr8 (144-192)||(43292567-43292615)
chr8 (46-95)||(43932047-43932096)
chr8 (1-48)||(32854915-32854965)
chr8 (46-114)||(35794608-35794676)
[»] chr4 (33 HSPs)
chr4 (46-189)||(54864062-54864210)
chr4 (46-189)||(43141768-43141916)
chr4 (46-192)||(37895254-37895405)
chr4 (45-178)||(35877311-35877449)
chr4 (46-192)||(33622879-33623030)
chr4 (46-192)||(36196364-36196515)
chr4 (53-194)||(25874704-25874851)
chr4 (52-177)||(50511259-50511389)
chr4 (47-156)||(8347527-8347641)
chr4 (48-192)||(43556690-43556840)
chr4 (46-192)||(32193474-32193625)
chr4 (47-192)||(33615778-33615928)
chr4 (53-177)||(19350626-19350753)
chr4 (52-177)||(35929014-35929143)
chr4 (54-132)||(50511491-50511569)
chr4 (47-132)||(24100758-24100843)
chr4 (62-131)||(52278032-52278101)
chr4 (46-192)||(25756711-25756862)
chr4 (46-192)||(29686399-29686550)
chr4 (58-192)||(52136698-52136837)
chr4 (81-177)||(40592726-40592827)
chr4 (55-177)||(52966409-52966536)
chr4 (50-191)||(56491072-56491218)
chr4 (46-111)||(53225729-53225794)
chr4 (47-131)||(42159972-42160056)
chr4 (47-177)||(31853066-31853201)
chr4 (47-88)||(17316588-17316629)
chr4 (62-131)||(22210803-22210872)
chr4 (46-95)||(29686398-29686447)
chr4 (46-95)||(48361050-48361099)
chr4 (47-95)||(4418198-4418246)
chr4 (47-95)||(44111846-44111894)
chr4 (47-95)||(52136698-52136746)
[»] chr5 (26 HSPs)
chr5 (46-189)||(20502085-20502233)
chr5 (47-192)||(38978741-38978891)
chr5 (46-192)||(29451891-29452041)
chr5 (46-192)||(33247291-33247441)
chr5 (52-192)||(29874316-29874461)
chr5 (46-192)||(7537019-7537170)
chr5 (49-178)||(9630248-9630382)
chr5 (46-177)||(35204922-35205057)
chr5 (46-177)||(35212102-35212237)
chr5 (47-192)||(5355550-5355700)
chr5 (47-132)||(32455203-32455288)
chr5 (57-192)||(24173419-24173559)
chr5 (47-178)||(27600758-27600893)
chr5 (47-192)||(29002741-29002891)
chr5 (46-132)||(19211278-19211364)
chr5 (51-177)||(33970671-33970802)
chr5 (139-192)||(30132884-30132937)
chr5 (134-193)||(8680632-8680691)
chr5 (45-95)||(73781-73831)
chr5 (44-106)||(13789822-13789884)
chr5 (46-87)||(5355660-5355701)
chr5 (46-91)||(30132840-30132885)
chr5 (47-95)||(8680642-8680690)
chr5 (52-92)||(13278990-13279030)
chr5 (46-106)||(22731348-22731408)
chr5 (47-95)||(29031137-29031185)
[»] chr7 (30 HSPs)
chr7 (46-192)||(41487789-41487940)
chr7 (46-131)||(12806906-12806991)
chr7 (47-192)||(27320293-27320443)
chr7 (46-178)||(41395675-41395812)
chr7 (50-177)||(45123247-45123379)
chr7 (46-132)||(47484085-47484171)
chr7 (47-131)||(40198603-40198687)
chr7 (47-192)||(18064721-18064871)
chr7 (72-177)||(47280188-47280297)
chr7 (47-192)||(22618162-22618312)
chr7 (47-192)||(47612289-47612439)
chr7 (54-177)||(37006470-37006599)
chr7 (50-192)||(24164518-24164665)
chr7 (46-132)||(45025592-45025678)
chr7 (47-132)||(33901037-33901122)
chr7 (47-132)||(41088851-41088936)
chr7 (47-178)||(10674122-10674258)
chr7 (47-114)||(10007658-10007725)
chr7 (50-132)||(13860281-13860363)
chr7 (134-192)||(24932460-24932518)
chr7 (46-95)||(2523871-2523920)
chr7 (79-132)||(7456483-7456536)
chr7 (46-111)||(24932381-24932446)
chr7 (108-192)||(40234765-40234854)
chr7 (46-177)||(28248429-28248569)
chr7 (137-192)||(41088851-41088906)
chr7 (46-132)||(14543266-14543352)
chr7 (46-95)||(34840608-34840657)
chr7 (47-95)||(13807241-13807289)
chr7 (47-95)||(40234765-40234813)
[»] chr3 (30 HSPs)
chr3 (46-178)||(45113747-45113884)
chr3 (47-177)||(27302093-27302228)
chr3 (47-192)||(53284315-53284465)
chr3 (59-192)||(43901592-43901730)
chr3 (47-178)||(16123756-16123891)
chr3 (46-192)||(50659948-50660088)
chr3 (46-178)||(50100207-50100345)
chr3 (54-170)||(21944295-21944416)
chr3 (46-192)||(31376174-31376325)
chr3 (47-132)||(46220365-46220450)
chr3 (46-193)||(39616909-39617061)
chr3 (46-192)||(53703728-53703880)
chr3 (47-132)||(24489377-24489461)
chr3 (46-132)||(19227372-19227458)
chr3 (46-132)||(44118247-44118333)
chr3 (47-192)||(48346449-48346599)
chr3 (134-190)||(2544550-2544606)
chr3 (144-192)||(31376276-31376324)
chr3 (144-192)||(39617012-39617060)
chr3 (46-95)||(21662884-21662933)
chr3 (47-132)||(48643668-48643753)
chr3 (137-193)||(2544435-2544491)
chr3 (144-192)||(53703729-53703777)
chr3 (81-128)||(27363229-27363276)
chr3 (137-192)||(48643698-48643753)
chr3 (47-106)||(53441997-53442056)
chr3 (46-95)||(31376173-31376222)
chr3 (47-92)||(51516957-51517002)
chr3 (47-95)||(2544436-2544484)
chr3 (144-192)||(19227409-19227457)
[»] chr6 (12 HSPs)
chr6 (46-193)||(30438741-30438893)
chr6 (46-192)||(28605569-28605720)
chr6 (53-156)||(12217526-12217635)
chr6 (47-132)||(10145279-10145364)
chr6 (50-131)||(12605675-12605756)
chr6 (46-192)||(2913331-2913482)
chr6 (62-132)||(9343134-9343204)
chr6 (67-132)||(3847472-3847537)
chr6 (47-95)||(23916228-23916276)
chr6 (46-132)||(33127850-33127939)
chr6 (46-114)||(2230431-2230499)
chr6 (141-193)||(23916225-23916277)
[»] chr2 (16 HSPs)
chr2 (46-192)||(36103392-36103543)
chr2 (46-178)||(15239705-15239842)
chr2 (46-169)||(28143767-28143895)
chr2 (46-187)||(40534517-40534663)
chr2 (46-178)||(45076340-45076477)
chr2 (55-165)||(23464522-23464638)
chr2 (62-177)||(27306725-27306843)
chr2 (47-193)||(27311575-27311726)
chr2 (46-192)||(25795237-25795388)
chr2 (62-131)||(9373459-9373528)
chr2 (46-111)||(12873721-12873786)
chr2 (67-111)||(28249018-28249062)
chr2 (137-192)||(25795332-25795387)
chr2 (46-103)||(13775804-13775861)
chr2 (46-95)||(41153212-41153261)
chr2 (47-114)||(7943521-7943589)
[»] chr1 (24 HSPs)
chr1 (47-192)||(52279233-52279383)
chr1 (47-187)||(45977098-45977243)
chr1 (49-192)||(13320302-13320450)
chr1 (46-189)||(15699462-15699610)
chr1 (80-192)||(13770741-13770858)
chr1 (79-178)||(44224300-44224404)
chr1 (79-170)||(29438169-29438265)
chr1 (50-192)||(27687840-27687987)
chr1 (46-192)||(51590428-51590579)
chr1 (46-178)||(19998409-19998546)
chr1 (69-132)||(32837657-32837720)
chr1 (46-95)||(51590531-51590580)
chr1 (47-178)||(31050249-31050385)
chr1 (46-120)||(25238649-25238723)
chr1 (147-178)||(13321727-13321758)
chr1 (50-132)||(13321716-13321798)
chr1 (46-88)||(48565635-48565677)
chr1 (46-95)||(18038789-18038838)
chr1 (46-95)||(26924211-26924260)
chr1 (46-95)||(50155399-50155448)
chr1 (145-186)||(52030963-52031004)
chr1 (47-95)||(29256699-29256747)
chr1 (134-178)||(34174899-34174943)
chr1 (144-192)||(51590429-51590477)
[»] scaffold0200 (1 HSPs)
scaffold0200 (45-187)||(25618-25766)
[»] scaffold0059 (1 HSPs)
scaffold0059 (45-192)||(26585-26737)
[»] scaffold0767 (2 HSPs)
scaffold0767 (46-178)||(3807-3944)
scaffold0767 (142-192)||(3808-3858)
[»] scaffold0023 (1 HSPs)
scaffold0023 (46-192)||(112822-112973)
[»] scaffold0110 (1 HSPs)
scaffold0110 (46-132)||(40255-40341)
[»] scaffold0176 (1 HSPs)
scaffold0176 (59-131)||(19308-19377)
[»] scaffold0015 (1 HSPs)
scaffold0015 (47-132)||(17384-17469)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 203 - 344
Target Start/End: Complemental strand, 32850377 - 32850236
Alignment:
Q  203 aaacaaagaaagaaaggaaacgggttagggtttctctcgatctctttttaacgcaaaccctagcacatctgttttgtggttcccatccaaacttattcat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850377 aaacaaagaaagaaaggaaacgggttagggtttctctcgatctctttttaacgcaaaccctagcacatctgttttgtggttcccatccaaacttattcat 32850278  T
Q  303 tttgaataagaaaaagcatggtagagtccaactccaaagaag 344  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  32850277 tttgaataagaaaaagcatggcagagtccaactccaaagaag 32850236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 13832025 - 13831874
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||       |||||||    
T  13832025 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactatatacatcacttat 13831926  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||||||||||||||||| ||||||| || | ||||||||    
T  13831925 acaatgaaccaaaaaagttaattgtttcttataataaggaccgaagggagta 13831874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 34604779 - 34604930
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||      |||||||    
T  34604779 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataaataatgtatcttattgtaaatatagactagatacatcacttat 34604878  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| | ||||||||||| ||||||| || ||||||||||    
T  34604879 acaatgaaccaaaaaaatcaattgtttcttataataaggaccggagggagta 34604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 35583881 - 35584032
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||||| |||||||| |||||||||| ||||| |||||| |||||| ||||||||| ||||||||||||||||||||| |||      |||||||    
T  35583881 atactccctccagtccttattataagaaaaatatgaccttttaggttcatagaataattaatgtatcttattgtaaatatagattagatacatcacttat 35583980  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  35583981 acaatgaaccaaaaaagttaattgtttcttataataaggaccggagggagta 35584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 29690434 - 29690585
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||||  |||||||| ||||||||||  ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||      |||||||    
T  29690434 atactccctctagtccttattataagaaaaaactgactttttaggttcatagaataattaatgtatcttattataaatatagactagatacatcacttat 29690533  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||| ||||    
T  29690534 acaatgaaccaaaaaagttaattgtttcttataataaggaccggaggaagta 29690585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 45372704 - 45372854
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||  ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||      |||||| |    
T  45372704 tactccctccggtccttaatataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgaaaatatagactagatacatcacttaca 45372803  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    || |||| ||||||||| ||||||| ||| ||||||| || ||||||||||    
T  45372804 cattgaatcaaaaaagtcaattgttacttataataaggaccggagggagta 45372854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 7548648 - 7548496
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatga-ctttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccactta 139  Q
    |||||||||||||||||||| ||||||||||| |||  ||||||| |||||| ||||||||| | |||||||||||||||||| |||       ||||||    
T  7548648 atactccctccggtccttattataagaaaaagttgatttttttaggttcatagaataattaatgcatcttattgtaaatatagtctaaatacatcactta 7548549  T
Q  140 tacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
     |||||||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  7548548 cacaatgaaccaaaaaaattaattgtttcttataataaggaccggagggagta 7548496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 44580043 - 44579907
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||| | |||||||| ||||||||||| ||||||||||  |||||| ||||||||| |||||||||||||||||||||||||       ||||||    
T  44580043 atactcccttcagtccttattataagaaaaagttgactttttaagttcatagaataattaatgtatcttattgtaaatatagactagatatattacttat 44579944  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    ||||| || ||||||||||||||||||||| ||||||    
T  44579943 acaataaatcaaaaaagttaattgtttcttataataa 44579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 43932199 - 43932048
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  |||||||||||||||||  ||||||||| ||||||| || |||||||||| |||      || || |    
T  43932199 atactccctccggtccttattataagaaacaattgactttttagattcattgaataattaatgtatcttgttataaatatagattagatacatcatttgt 43932100  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| ||||||| ||||||||||| ||||||| || ||||||||||    
T  43932099 acaatgaacctaaaaagtcaattgtttcttataataaggaccggagggagta 43932048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 43292566 - 43292703
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||      ||||||     
T  43292566 atactccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttac 43292665  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    | |||||||| ||||||| || |||||||| |||||||    
T  43292666 ataatgaacctaaaaagtcaaatgtttcttataataag 43292703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 34745255 - 34745341
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||||||||| |||||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||    
T  34745255 atactccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatatagactag 34745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 43409984 - 43409833
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| || || || | |||||||||| | |||||  ||||||||| ||| ||  || ||||||||||||||       ||||||    
T  43409984 atactccctccggtccttattattagcaacaaatgactttttcggttcattgaataattaatgtacctcgttataaatatagactagatacattacttat 43409885  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| ||||||| ||||| | ||| ||||||| || ||||||||||    
T  43409884 acaatgaacctaaaaagtcaattgctgcttataataaggaccggagggagta 43409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 8242194 - 8242148
Alignment:
Q  135 acttatacaatgaaccaaaaaagttaattgtttcttgtaataagaac 181  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||    
T  8242194 acttatacaatgaaccaaaaaagtcaactgtttcttataataagaac 8242148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 9633089 - 9633165
Alignment:
Q  56 cggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||| |||||||| |  |||| ||||||||||||   |||||||| ||||||| || ||||||||||||||    
T  9633089 cggtccttattataagaaacaattgacgttttagattcattgtataattaatgtatcttgttataaatatagactag 9633165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 34745304 - 34745256
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  34745304 atgaaccaaaaaagtcaattgtttcttataataaggaccggagggagta 34745256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 43292615 - 43292567
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  43292615 atgaaccaaaaaagtcaattgtttcttataataaggaccggagggagta 43292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 43932047 - 43932096
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  43932047 atactccctccggtccttattataagaaacaattgactttttaggttcat 43932096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32854965 - 32854915
Alignment:
Q  1 gatagaattatttttagtgggtctatatataca---agagaaaggaagata 48  Q
    |||||||||||| |||||||||||||||||| |   |||||||||||||||    
T  32854965 gatagaattattgttagtgggtctatatatatacagagagaaaggaagata 32854915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 35794676 - 35794608
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatctt 114  Q
    |||||||||||||||||||| ||||||||    | |||||||||||||||  | ||||||| |||||||    
T  35794676 atactccctccggtccttattataagaaactttttactttttagattcattgagtaattaatgtatctt 35794608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 54864062 - 54864210
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||      |||||||    
T  54864062 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactagatacatcacttat 54864161  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggaggga 189  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  54864162 acaatgaaccaaaaaagttaattgtttcttataataaggaccggaggga 54864210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 43141916 - 43141768
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||      |||||||    
T  43141916 atacttcctccggtctttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagattagatacatcacttat 43141817  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggaggga 189  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  43141816 acaatgaaccaaaaaagttaattgtttcttataataaggaccggaggga 43141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 37895405 - 37895254
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||      |||||||    
T  37895405 atactccctccggtccttattataagaaaaagttgactttttagattcatagaataattaatgtattttattgtaaatgtagactagatacatcacttat 37895306  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| | || |||||||| ||||||| || ||||||||||    
T  37895305 acaatgaaccaaaaaaatcaactgtttcttataataaggaccggagggagta 37895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 35877311 - 35877449
Alignment:
Q  45 gatactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccactta 139  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||       ||||||    
T  35877311 gatactccctccggtccttattataagaaaaagttgactttttagattcatagaataattaatgtatcttattgtaaatatagtctaaatacatcactta 35877410  T
Q  140 tacaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
     |||||||||||||||| ||||||||||||| |||||||    
T  35877411 cacaatgaaccaaaaaaattaattgtttcttataataag 35877449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 33623030 - 33622879
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||| ||| ||| ||||||||||  ||||||||||  |||||| ||||||||| ||||||||||||||||||| |||||      ||| |||    
T  33623030 atactccctccgatccctattataagaaaaaattgactttttacgttcatagaataattaatgtatcttattgtaaatataaactagatacatcacctat 33622931  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  33622930 acaatgaaccaaaaaagttaattgtttcttataataaggaccggagggagta 33622879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 36196515 - 36196364
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttat 140  Q
    |||||||||||||||||||| ||||||||||  ||| |||||||||||||| ||||||||| |||||||||||||||| |||||||       |||||||    
T  36196515 atactccctccggtccttattataagaaaaaattgattttttagattcatagaataattaatgtatcttattgtaaatgtagactatatacatcacttat 36196416  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    | |||||||||||||| | ||||||||||| ||||||| || ||||||||||    
T  36196415 aaaatgaaccaaaaaaatcaattgtttcttataataaggaccggagggagta 36196364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 25874704 - 25874851
Alignment:
Q  53 ctccggtccttataataagaaaaagat-gactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatg 146  Q
    ||||||||||||| |||| ||||| || || |||||||||||||| ||||||||| |||| ||||||||||||||||||||      |||||||||||||    
T  25874704 ctccggtccttattataaaaaaaaaatagattttttagattcatagaataattaatgtattttattgtaaatatagactagatacatcacttatacaatg 25874803  T
Q  147 aaccaaaaaagttaattgtttcttgtaataagaacgggagggagtagc 194  Q
    |||||||||| |||||| |||||| ||||||| || ||||||||||||    
T  25874804 aaccaaaaaaattaattctttcttataataaggaccggagggagtagc 25874851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 50511389 - 50511259
Alignment:
Q  52 cctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttatacaatg 146  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||| ||||||||| |||||||||||||||||||| |||       |||||| ||||||    
T  50511389 cctccggtccttattataagaaaaagttgactctttagatttatagaataattaatgtatcttattgtaaatatagtctaaatacatcacttacacaatg 50511290  T
Q  147 aaccaaaaaagttaattgtttcttgtaataa 177  Q
    |||||||||||||||||||||||| ||||||    
T  50511289 aaccaaaaaagttaattgtttcttataataa 50511259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 8347641 - 8347527
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||      || |||||    
T  8347641 tactccctccggtccttattataagaaaaagttgactttttaggttcatagaataaataatgtatcttattgtaaatatagactagatacatcatttata 8347542  T
Q  142 caatgaaccaaaaaa 156  Q
    |||||||||||||||    
T  8347541 caatgaaccaaaaaa 8347527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 43556840 - 43556690
Alignment:
Q  48 actccctccggtccttataataagaaaaagat-gactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttata 141  Q
    |||||||||||||||||| |||||||||| || || ||||||| |||||| ||||||||| |||||||||||||||| |||||||     | |||||| |    
T  43556840 actccctccggtccttattataagaaaaaaattgattttttaggttcatagaataattaatgtatcttattgtaaatgtagactagatacgtcacttaca 43556741  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||| |||| |||||| | ||||||||||| ||||||| || ||||||||||    
T  43556740 caacgaactaaaaaaatcaattgtttcttataataaggaccggagggagta 43556690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 32193625 - 32193474
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||| |||||||||||||| ||||||||| | ||| ||||||  |||||| ||||||||| ||| ||||||  |||||||||||||       |||||     
T  32193625 atacttcctccggtccttattataagaaaacgttgattttttaagttcatagaataattaatgtaccttattagaaatatagactagatacattacttac 32193526  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    | |||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  32193525 ataatgaaccaaaaaagtcaattgtttcttataataaggaccggagggagta 32193474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 33615778 - 33615928
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||| ||||||||    ||| |||||||||||||  | ||||||| |||||||||||||||||||||||||      |||||| |    
T  33615778 tactccctccggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttattgtaaatatagactagatacatcacttaca 33615877  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||| | ||||| | |||||||| || ||||||| || ||||||||||    
T  33615878 caatgaatctaaaaattcaattgttttttataataaggaccggagggagta 33615928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 19350753 - 19350626
Alignment:
Q  53 ctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagc----cacttatacaatgaa 148  Q
    ||||||||||||| | || |||||| ||||||||||| || ||| |||| |||| || ||||||| |||||| |||||||     |||||| ||||||||    
T  19350753 ctccggtccttattaaaaaaaaaagttgactttttaggtttatagaatacttaatgt-tcttattataaataaagactagatactcacttacacaatgaa 19350655  T
Q  149 ccaaaaaagttaattgtttcttgtaataa 177  Q
    |||||||| ||||||||||||| ||||||    
T  19350654 ccaaaaaaattaattgtttcttataataa 19350626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 35929014 - 35929143
Alignment:
Q  52 cctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatg 146  Q
    ||||| ||| |||| ||||||||||| ||| ||||||| || ||| ||||||||| |||||||||| |||||||||| |||      |||||| ||||||    
T  35929014 cctcccgtctttattataagaaaaagttgattttttaggtttatagaataattaatgtatcttattataaatatagattagatacatcacttacacaatg 35929113  T
Q  147 aaccaaaaaagttaattgtttcttgtaataa 177  Q
    |||||||||| | ||||||||||| ||||||    
T  35929114 aaccaaaaaa-tcaattgtttcttataataa 35929143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 50511569 - 50511491
Alignment:
Q  54 tccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||| | || ||||||||||| ||||| ||||| |||||| ||||||||| ||||||||||||||||||| |||||    
T  50511569 tccggtcttcattataagaaaaagttgactctttaggttcatagaataattaatgtatcttattgtaaatataaactag 50511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 24100758 - 24100843
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||| ||||||| |||||||| |  | |||||||||||||||  ||||||||| ||||||| || ||||||||||||||    
T  24100758 tactccctccgatccttattataagaaataattaactttttagattcattgaataattaatgtatcttgttataaatatagactag 24100843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 52278101 - 52278032
Alignment:
Q  62 ttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    |||| ||||||||||  |||||||||||||| ||| |||||||||  |||||||||||||||||||||||    
T  52278101 ttattataagaaaaaattgactttttagatttatagaataattaatatatcttattgtaaatatagacta 52278032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 25756862 - 25756711
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  ||||||||||  |||||   |||||||| ||||||  || |||||| |||||||      ||||||     
T  25756862 atactccctccggtccttattataagaaacaattgactttttatgttcattggataattaatgtatctcgttataaatagagactagatacatcacttac 25756763  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||| |||||| ||||||| |||| |||||| ||||||| || ||||||||||    
T  25756762 acagtgaacctaaaaagtcaattatttcttataataaggaccggagggagta 25756711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 29686550 - 29686399
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  | | |||||| ||||||   |||||||| |||| || || ||||||||||||||      || |||     
T  29686550 atactccctccggtccttattataagaaacaattaattttttaaattcattgtataattaatgtatattgttataaatatagactagatacatcatttac 29686451  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| ||||||| || |||||||| ||||||| || ||||||||||    
T  29686450 acaatgaacctaaaaagtcaaatgtttcttataataaggaccggagggagta 29686399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 52136837 - 52136698
Alignment:
Q  58 gtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagc-----cacttatacaatgaaccaa 152  Q
    |||||||| |||||||| |  ||| |||||   |||||| ||||||||| ||||||| || |||||||||||||       |||||| |||||||||| |    
T  52136837 gtccttattataagaaacaattgatttttttagttcatagaataattaatgtatcttgttataaatatagactaaatacatcacttacacaatgaaccta 52136738  T
Q  153 aaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||| |||||| ||||||| || ||||||||||    
T  52136737 aaaagttaattttttcttataataaggaccggagggagta 52136698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 40592827 - 40592726
Alignment:
Q  81 actttttagattcataaaataattaacgtatcttattgtaaatatagactagc-----cacttatacaatgaaccaaaaaagttaattgtttcttgtaat 175  Q
    ||||||||| || ||| ||||||||| ||||||| || |||||||| |||||      ||||||||||||||| | ||||||||||||||||||| ||||    
T  40592827 actttttaggtttatagaataattaatgtatcttgttataaatataaactagatacatcacttatacaatgaatccaaaaagttaattgtttcttataat 40592728  T
Q  176 aa 177  Q
    ||    
T  40592727 aa 40592726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 52966536 - 52966409
Alignment:
Q  55 ccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaac 149  Q
    ||||||||||| |||||||| |  ||||||||| | |||||| ||||||||| | ||||| || ||||||||||||||      ||||||||||||||||    
T  52966536 ccggtccttattataagaaacaattgacttttttggttcatagaataattaatgcatcttgttataaatatagactagatacatcacttatacaatgaac 52966437  T
Q  150 caaaaaagttaattgtttcttgtaataa 177  Q
      ||||||| || | |||||| ||||||    
T  52966436 ttaaaaagtcaaatttttcttataataa 52966409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 56491218 - 56491072
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagccac-----ttatacaa 144  Q
    |||||| ||||||||| ||||| || | |||||||||||  |||||  ||||||||| ||| ||  || ||||||||||||||  ||     ||||||||    
T  56491218 tccctcgggtccttattataagcaacaaatgactttttaagttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaa 56491119  T
Q  145 tgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagt 191  Q
    |||||| ||||||| ||||| | ||| ||||||| || |||||||||    
T  56491118 tgaacctaaaaagtcaattgctgcttataataaggaccggagggagt 56491072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 53225794 - 53225729
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtat 111  Q
    |||||||||||||||||  | ||||||||||  |||||||||||||||||  ||||||||| ||||    
T  53225794 atactccctccggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtat 53225729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 42159972 - 42160056
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    ||||| ||||||||||||| |||||||| |  ||| |||||   |||||| ||||||||| ||||||| || |||||||||||||    
T  42159972 tactcactccggtccttattataagaaataattgattttttttgttcatagaataattaatgtatcttgttataaatatagacta 42160056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 31853066 - 31853201
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||| || || |||| |||||||| |  ||| |||||  ||||||| ||||||||| ||||||| || ||||||||||||||      |||||| |    
T  31853066 tactcccttcgatctttattataagaaataattgatttttttaattcatagaataattaatgtatcttgttataaatatagactagatacatcacttaca 31853165  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    ||||||||| ||||||| || | |||||| ||||||    
T  31853166 caatgaacctaaaaagtcaaatttttcttataataa 31853201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 17316629 - 17316588
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgacttttta 88  Q
    ||||||||||||||||||| ||||||||||| | ||||||||    
T  17316629 tactccctccggtccttattataagaaaaagttaacttttta 17316588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 22210803 - 22210872
Alignment:
Q  62 ttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    |||| |||||||| |  |||||||||| ||||||  |||||||||  |||||| ||||||||||||||||    
T  22210803 ttattataagaaacaattgactttttaaattcattgaataattaatatatcttgttgtaaatatagacta 22210872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 29686398 - 29686447
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  29686398 atactccctccggtccttattataagaaacatttgactttttaggttcat 29686447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 48361050 - 48361099
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||  | ||||||||||  |||||||||||||||||    
T  48361050 atactccctccggtcctatttataagaaaaatttgactttttagattcat 48361099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 4418246 - 4418198
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||| ||||||||||  ||| ||||||| |||||    
T  4418246 tactccctccggtccttattataagaaaaaattgattttttaggttcat 4418198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 44111894 - 44111846
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||| |  | ||||||||||| |||||||||||||||||    
T  44111894 tactccctccggtcttatttataagaaaaagttgactttttagattcat 44111846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 52136698 - 52136746
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||| ||||||||||  | ||||||||| |||||    
T  52136698 tactccctccggtccttattataagaaaaaattaactttttaggttcat 52136746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 20502085 - 20502233
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||      ||||||     
T  20502085 atacttcctccggtccttattataagaaaaagttgactttttagattcatagaataattaatgtatcttattgtaaatatagactagatacatcacttac 20502184  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggaggga 189  Q
    |||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  20502185 acaatgaaccaaaaaaattaattgtttcttataataaggaccggaggga 20502233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 38978741 - 38978891
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||||||      |||||| |    
T  38978741 tactccctccagtccttattataagaaaaagttgactttttagattcatagaataattaatatatcttattgtaaatatagactagatacatcacttaca 38978840  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||||| ||||||| |  ||||||||||    
T  38978841 caatgaaccaaaaaaattaattgtttcttataataaggatcggagggagta 38978891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 29451891 - 29452041
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||      ||||||     
T  29451891 atactccctccggtccttattataagaaaaagttgattttttagattcatagaataattaatgtatcttattgtaaatatatactagatacatcacttac 29451990  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| | ||||||||||| ||||||| |  ||||||||||    
T  29451991 acaatgaaccaaaaaa-tcaattgtttcttataataaggatcggagggagta 29452041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 33247441 - 33247291
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||| |||||||||||| | ||||||||||| ||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||      |||||||    
T  33247441 atacttcctccggtccttgttataagaaaaagttgactttttaggttcat-aaataattaatatatcttattgtaaatatagactagatatatcacttat 33247343  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    | ||||||||||||||||||||||| |||| ||||||| || ||||||||||    
T  33247342 agaatgaaccaaaaaagttaattgtctcttataataaggaccggagggagta 33247291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 29874461 - 29874316
Alignment:
Q  52 cctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatg 146  Q
    |||||||||||||  ||||||||||| | ||||||||| |||||| ||||||||| |||| |||||  |||||||||||||      |||||| ||||||    
T  29874461 cctccggtccttaatataagaaaaagttaactttttaggttcatagaataattaatgtattttattaaaaatatagactagatacatcacttaaacaatg 29874362  T
Q  147 aaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||| ||||||||||| || ||||||| ||||||||||    
T  29874361 aaccaaaaaagtcaattgtttcttatattaagaaccggagggagta 29874316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 7537019 - 7537170
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||| ||||| ||||||||||  |||||| |||| || ||| ||||||||| ||||||||| ||||||||| |||||      ||||||     
T  7537019 atactccctccggttcttattataagaaaaaattgacttcttaggttaatagaataattaatgtatcttatcgtaaatatatactagatacatcacttac 7537118  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| | |||||||| || ||||||| || ||||||||||    
T  7537119 acaatgaaccaaaaaaatcaattgttttttataataaggaccggagggagta 7537170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 9630382 - 9630248
Alignment:
Q  49 ctccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttataca 143  Q
    |||||||||||| |||| |||| |||||  ||| |||||||||||||| ||||||||| |||||||||||||||||||  |||       |||||| |||    
T  9630382 ctccctccggtctttattataacaaaaaattgattttttagattcatagaataattaatgtatcttattgtaaatataatctaaatatatcacttacaca 9630283  T
Q  144 atgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    ||||||||||||| ||||||||||||| |||||||    
T  9630282 atgaaccaaaaaaattaattgtttcttataataag 9630248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 35204922 - 35205057
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||||| || ||||| ||||||||||| ||| ||||||| |||||| ||||||||| |||||||||||||||||||| ||||      | ||||     
T  35204922 atactccctcctgtacttattataagaaaaagttga-tttttaggttcatagaataattaatgtatcttattgtaaatatagtctagatacatcccttac 35205020  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    ||||||||| |||||||| ||||||||||| ||||||    
T  35205021 acaatgaactaaaaaagtcaattgtttcttataataa 35205057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 35212237 - 35212102
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||||| || ||||| ||||||||||| ||| ||||||| |||||| ||||||||| |||||||||||||||||||| ||||      | ||||     
T  35212237 atactccctcctgtacttattataagaaaaagttga-tttttaggttcatagaataattaatgtatcttattgtaaatatagtctagatacatcccttac 35212139  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    ||||||||| |||||||| ||||||||||| ||||||    
T  35212138 acaatgaactaaaaaagtcaattgtttcttataataa 35212102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 5355550 - 5355700
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttata 141  Q
    ||||||||||| || ||||  |||||||||| | || |||||| |||||| ||||||||| ||||||||||||||||||| ||||       |||||| |    
T  5355550 tactccctccgatctttattctaagaaaaagttaacattttaggttcatagaataattaatgtatcttattgtaaatataaactaaatacatcacttaca 5355649  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||| |||||||| || |||||||| ||||||| || ||||||||||    
T  5355650 caatgaactaaaaaagtcaactgtttcttataataaggaccggagggagta 5355700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 32455288 - 32455203
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||| |||||||| ||||||||||| | || |||||  |||||| ||||||||| |||||||||||||||||||||||||    
T  32455288 tactccctccagtccttattataagaaaaagttaacattttaagttcatagaataattaatgtatcttattgtaaatatagactag 32455203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 24173559 - 24173419
Alignment:
Q  57 ggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaacca 151  Q
    ||||||||| ||||||||||| ||||||||||  || ||| ||||||||| ||||||||||| ||||||||| |||      |||||| ||||||||| |    
T  24173559 ggtccttattataagaaaaagttgactttttaagtttatagaataattaatgtatcttattgaaaatatagattagatacatcacttacacaatgaacta 24173460  T
Q  152 aaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||| | |||| |||||| ||||||| || ||||||||||    
T  24173459 aaaaaatcaattatttcttataataaggactggagggagta 24173419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 27600758 - 27600893
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||||||||| |||| ||||||||||  ||||||||||  |||||| ||||||||| ||||||||||||||||||||| |||      |||||| |    
T  27600758 tactccctccggtctttattataagaaaaat-tgactttttaagttcatagaataattaatgtatcttattgtaaatatagattagataaatcacttaca 27600856  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    ||||||| ||||||| | |||| |||||| |||||||    
T  27600857 caatgaatcaaaaaaatcaattatttcttataataag 27600893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 29002891 - 29002741
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||||  |||||||| ||||||||||| ||| ||||||| || ||  |||||||||  |||||||| | |||||||||||||      |||||| |    
T  29002891 tactccctcatgtccttattataagaaaaagttgattttttaggtttatggaataattaatatatcttatcgaaaatatagactagatacatcacttaca 29002792  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||||| ||||||||||| ||| ||| |  ||||||||||    
T  29002791 caatgaaccaaaaaagtcaattgtttcttataacaaggatcggagggagta 29002741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 19211278 - 19211364
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||||||||| ||||||||    |||||||||| ||||||  | ||||||| ||||||| |||||||||||||||||    
T  19211278 atactccctccggtccttattataagaaacttttgactttttatattcattgagtaattaatgtatcttgttgtaaatatagactag 19211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 33970802 - 33970671
Alignment:
Q  51 ccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttatacaat 145  Q
    ||||||||||||||| ||||||||||| ||| | ||||| |||||| ||||||||| |||| |||||  ||||||| ||||       || |||||||||    
T  33970802 ccctccggtccttattataagaaaaagttgattgtttagtttcatagaataattaatgtattttattaaaaatatatactaaatacatcatttatacaat 33970703  T
Q  146 gaaccaaaaaagttaattgtttcttgtaataa 177  Q
     ||  |||||||||||||||||||| ||||||    
T  33970702 aaaataaaaaagttaattgtttcttataataa 33970671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 30132884 - 30132937
Alignment:
Q  139 atacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  30132884 atacaatgaatcaaaaaagttaattgtttcttataataaggaccggagggagta 30132937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 8680632 - 8680691
Alignment:
Q  134 cacttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    |||||| |||||||||| ||||||| || |||||||| ||||||| || |||||||||||    
T  8680632 cacttaaacaatgaacctaaaaagtcaaatgtttcttataataaggaccggagggagtag 8680691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 73781 - 73831
Alignment:
Q  45 gatactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||||| |||| ||| |  |||||||||||||||||    
T  73781 gatactccctccggtccttattataaaaaacaattgactttttagattcat 73831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 13789884 - 13789822
Alignment:
Q  44 agatactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaa 106  Q
    |||||||||||||||| ||  | ||||||||||| |||||||| ||||||||  |||||||||    
T  13789884 agatactccctccggttctatttataagaaaaagttgacttttcagattcattgaataattaa 13789822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 5355701 - 5355660
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgacttttt 87  Q
    |||||||||||||||||||| |||||||| || |||||||||    
T  5355701 atactccctccggtccttattataagaaacagttgacttttt 5355660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 30132840 - 30132885
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagat 91  Q
    |||||||||||||||||||| ||||||||||  | |||||||||||    
T  30132840 atactccctccggtccttattataagaaaaaattaactttttagat 30132885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 8680690 - 8680642
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  8680690 tactccctccggtccttattataagaaacatttgactttttaggttcat 8680642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 13279030 - 13278990
Alignment:
Q  52 cctccggtccttataataagaaaaagatgactttttagatt 92  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  13279030 cctccggtccttattataagaaacagttgactttttagatt 13278990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 22731408 - 22731348
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaa 106  Q
    ||||| |||||||||||  | ||||||||||| | | ||||||||||||| ||||||||||    
T  22731408 atactacctccggtcctatttataagaaaaagttaattttttagattcattaaataattaa 22731348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 29031185 - 29031137
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||  | ||||||||||| | |||||||||||||||    
T  29031185 tactccctccggtcctatttataagaaaaagttaactttttagattcat 29031137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 41487789 - 41487940
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||      ||||||     
T  41487789 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactagatacatcacttac 41487888  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| | ||||||||||| ||||||| || ||||||||||    
T  41487889 acaatgaaccaaaaaaatcaattgtttcttataataaggaccggagggagta 41487940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 12806906 - 12806991
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12806906 atactccctccggtccttattataagaaaaagttgactttttaggttcataaaataattaatgtatcttattgtaaatatagacta 12806991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 27320293 - 27320443
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||||| |||||||| ||||||||||| ||||||||||  |||||||||||||| |  ||||||||||||||||||||||||       |||||||    
T  27320293 tactccctcccgtccttattataagaaaaagttgactttttaagttcataaaataattgatatatcttattgtaaatatagactagaaacattacttata 27320392  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| | ||||||||||| ||||||| ||  |||||||||    
T  27320393 caatgaaccaaaaaaatcaattgtttcttataataaggaccagagggagta 27320443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 41395812 - 41395675
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||| |||||||||  ||||||||| ||||||||||||||      |||||||    
T  41395812 atacttccttcggttcttattataagaaaaagttgactttttagattcatagaataattaatatatcttattataaatatagactagatacatcacttat 41395713  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    ||||||||  |||||||||||||||||||| |||||||    
T  41395712 acaatgaattaaaaaagttaattgtttcttataataag 41395675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 45123247 - 45123379
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaa 144  Q
    |||||||||||||||  |||| |||||| |||||||||| ||||||| ||||||||| |||||||||| |||||||||| |||      |||||||||||    
T  45123247 tccctccggtccttactataaaaaaaagttgactttttaaattcatagaataattaatgtatcttattataaatatagattagatacatcacttatacaa 45123346  T
Q  145 tgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    |||| |||||||||||||| |||||| ||||||    
T  45123347 tgaatcaaaaaagttaattatttcttataataa 45123379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 47484171 - 47484085
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||| |||||||| ||||| ||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  47484171 atactccctcctgtccttattataagtaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactag 47484085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 40198603 - 40198687
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| | ||||| ||||||||||||||||    
T  40198603 tactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgcatcttgttgtaaatatagacta 40198687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 18064721 - 18064871
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||  ||||||||||| | ||||||||  |||||| ||||||||| ||||||||||| |||||||||||||      |||||| |    
T  18064721 tactccctccggtccttaatataagaaaaagttaactttttaagttcatagaataattaatgtatcttattgaaaatatagactagatacatcacttaaa 18064820  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||| ||||| || || |||||||| || |||| || ||| ||||||    
T  18064821 caatgaactaaaaatgtcaactgtttcttatattaaggaccggatggagta 18064871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 47280297 - 47280188
Alignment:
Q  72 aaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagccac-----ttatacaatgaaccaaaaaagttaattgtt 166  Q
    |||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||   ||     |||||||||||| |||||||||||||||||    
T  47280297 aaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactaaatacattatttatacaatgaa-caaaaaagttaattgtt 47280199  T
Q  167 tcttgtaataa 177  Q
    |||| ||||||    
T  47280198 tcttataataa 47280188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 22618162 - 22618312
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||| |||| ||||||| ||||||||    ||| |||||||||||||  | ||||||| ||||||| |||||||||||||||||      |||||| |    
T  22618162 tactccatccgttccttattataagaaatttttgattttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcacttaca 22618261  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||| ||||||| ||||||||||| ||||||| || |||| |||||    
T  22618262 caatgaacctaaaaagtcaattgtttcttataataaggaccggagtgagta 22618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 47612289 - 47612439
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||| || || || | |||||||||||| |||||  ||||||||| ||||||  || ||||||||||||||       |||||||    
T  47612289 tactccctccggtccttattattagcaacaaatgactttttaggttcattgaataattaatgtatctcgttataaatatagactagatacattacttata 47612388  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||| ||||||| ||||| | ||| ||||||| || ||||||||||    
T  47612389 caatgaacctaaaaagtcaattgctgcttataataaggaccggagggagta 47612439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 37006599 - 37006470
Alignment:
Q  54 tccggtccttataataagaaaaagat-gactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatga 147  Q
    |||||||||||| |||||||||| || |||||||||  |||||| ||||||||| ||||| ||||||||||||| ||| |      |||||||||||| |    
T  37006599 tccggtccttattataagaaaaaaattgactttttaagttcatagaataattaatgtatcatattgtaaatataaactggatacatcacttatacaataa 37006500  T
Q  148 accaaaaaagttaattgtttcttgtaataa 177  Q
    || |||||||| ||||||||||| ||||||    
T  37006499 actaaaaaagtcaattgtttcttataataa 37006470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 24164518 - 24164665
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaa 144  Q
    |||||||||||||||| |||||||| |  ||| ||||| | |||||| ||||||||| ||||||| ||  |||||||||||||      |||||| | ||    
T  24164518 tccctccggtccttattataagaaacaattgatttttttggttcatagaataattaatgtatcttgttagaaatatagactagatacatcacttacataa 24164617  T
Q  145 tgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||| ||||||| || |||||||| ||||||| |  ||||||||||    
T  24164618 tgaacctaaaaagtcaaatgtttcttataataaggatcggagggagta 24164665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 45025592 - 45025678
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||| ||||||||||||| |||||||| |  ||| ||||| | |||||| ||||||||| ||||||| || ||||||||||||||    
T  45025592 atactcactccggtccttattataagaaacaattgatttttttggttcatagaataattaatgtatcttgttataaatatagactag 45025678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 33901037 - 33901122
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||| |||||||| |||||||| |  ||| ||||| |||||||| |||| |||| ||||||| || ||||||||||||||    
T  33901037 tactccctcctgtccttattataagaaacaattgatttttttgattcatagaatagttaatgtatcttgttataaatatagactag 33901122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 41088851 - 41088936
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||||||||||| | |||||| |  |||||||||||||||||  ||||||||| |||| |  || ||||||||||||||    
T  41088851 tactccctccggtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatatagactag 41088936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 10674122 - 10674258
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||| ||||| |||| ||| |  ||||||||||| |||||  ||||||||| ||||||| || |||||||||| |||      |||||| |    
T  10674122 tactccctccggtacttattataaaaaacatttgactttttaggttcattgaataattaatgtatcttgttataaatatagattagatacatcacttaca 10674221  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
     |||||| | ||||||| ||||||||||| |||||||    
T  10674222 taatgaatctaaaaagtcaattgtttcttataataag 10674258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 10007725 - 10007658
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatctt 114  Q
    ||||||||||||||||  | ||||||||||| |||||||||||||||||   |||||||| |||||||    
T  10007725 tactccctccggtcctatttataagaaaaagttgactttttagattcattgtataattaatgtatctt 10007658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 13860363 - 13860281
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||| ||||||| |||||||| |  |||||||||||||||||   |||||||| |||| || || ||||||||||||||    
T  13860363 tccctccgatccttattataagaaacaattgactttttagattcattgtataattaatgtatattgttataaatatagactag 13860281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 24932460 - 24932518
Alignment:
Q  134 cacttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||| |  ||||||||||    
T  24932460 cacttatacaatgaactaaaaaagttaattgtctcttataataaggatcggagggagta 24932518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 2523920 - 2523871
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||  | ||||||||||| |||||||||||||||||    
T  2523920 atactccctccggtcctatttataagaaaaagttgactttttagattcat 2523871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 7456536 - 7456483
Alignment:
Q  79 tgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||||||  | ||||||| ||||||| |||||||||||||||||    
T  7456536 tgactttttagattcattgagtaattaatgtatcttgttgtaaatatagactag 7456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 24932381 - 24932446
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtat 111  Q
    ||||| ||| |||||||||| ||||||||||  ||||||||||| |||||| ||||||||| ||||    
T  24932381 atacttccttcggtccttattataagaaaaaattgactttttaggttcatagaataattaatgtat 24932446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 40234854 - 40234765
Alignment:
Q  108 gtatcttattgtaaatatagactagccac-----ttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||| |||||||||||||||||  ||     ||| |||||||| | ||||||| ||||||||||| |||||||||| ||||||||||    
T  40234854 gtatcttgttgtaaatatagactagatacatcagttacacaatgaatctaaaaagtcaattgtttcttataataagaaccggagggagta 40234765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 28248429 - 28248569
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagc-----cacttat 140  Q
    ||||||||||  |||||||| |||||||| |  |||| ||||||||||||  ||||||||| | ||||  || |||||||||||||       ||||||     
T  28248429 atactccctcgagtccttattataagaaacaattgacattttagattcattgaataattaatgcatctcgttataaatatagactatatacatcacttac 28248528  T
Q  141 acaat----gaaccaaaaaagttaattgtttcttgtaataa 177  Q
    |||||    ||||| ||||||||||||||||||||||||||    
T  28248529 acaattaatgaacctaaaaagttaattgtttcttgtaataa 28248569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 41088906 - 41088851
Alignment:
Q  137 ttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||| ||||||| | ||||||| ||||||||||||||||||| || ||||||||||    
T  41088906 ttattcaatgaatctaaaaagtcaattgtttcttgtaataaggaccggagggagta 41088851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 14543266 - 14543352
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||| ||| |||| ||||||||    ||| |||||||||||||  | ||||||| |||||||  ||||||||||||||||    
T  14543266 atactccctcctgtctttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgatgtaaatatagactag 14543352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 34840608 - 34840657
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||| |||| ||||| ||||| | |||||||||||||||    
T  34840608 atactccctccggtcattattataagcaaaagttcactttttagattcat 34840657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 13807241 - 13807289
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||| |  | ||||||||||| |||||||||||||||||    
T  13807241 tactccctccggtcttatttataagaaaaagttgactttttagattcat 13807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 40234765 - 40234813
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||| ||||| |||||||| |  |||||||||||||||||    
T  40234765 tactccctccggttcttattataagaaacaattgactttttagattcat 40234813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 45113884 - 45113747
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||      ||||||     
T  45113884 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattgtaaatatagactagatacatcacttac 45113785  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  45113784 acaatgaaccaaaaaaatcaattgtttcttataataag 45113747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 27302228 - 27302093
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||| ||||||||| |||| ||||||||||| ||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||      ||||||||    
T  27302228 tacttcctccggtctttattataagaaaaagttgactttttaggttcatagaataattaatgtatctaattgtaaatatagactagatacatcacttata 27302129  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataa 177  Q
    |||||||||||||||||||||| |||||| ||||||    
T  27302128 caatgaaccaaaaaagttaattctttcttataataa 27302093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 53284315 - 53284465
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||| || ||||||||| ||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||      ||||||||    
T  53284315 tactccttctggtccttattataagaaaaagttgattttttagtttcataaaataattaatgtatcttattgtaaatgtagactagatacatcacttata 53284414  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||| |||||||||| | ||||||||||| ||||||| || ||||| ||||    
T  53284415 caataaaccaaaaaaatcaattgtttcttataataaggaccggaggaagta 53284465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 43901592 - 43901730
Alignment:
Q  59 tccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaaccaaa 153  Q
    ||||||| ||| ||||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||      || ||| |||||||||||||    
T  43901592 tccttattatatgaaaaagttgactttttaggttcatagaataattaatgtatcttattgaaaatatagactaggtacatcatttacacaatgaaccaaa 43901691  T
Q  154 aaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||||| ||||||| || ||||| ||||    
T  43901692 aaagttaattgtttcttataataaggaccggaggtagta 43901730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 16123756 - 16123891
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||| |||||||||||||| ||||||||||  |||||||| || || |||||||||||||  ||||||||||||||||||||||||       |||||||    
T  16123756 tacttcctccggtccttattataagaaaaaattgactttt-aggtttataaaataattaatatatcttattgtaaatatagactagatacattacttata 16123854  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||||||||||||||||||| || |||||||    
T  16123855 caatgaaccaaaaaagttaattgttttttataataag 16123891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 50660088 - 50659948
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagccacttatacaat 145  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||| ||| |       |||||| |||||    
T  50660088 atactctctccggtccttattataagaaaaagttgactttttagatttatagaataattaatgtatcttattgtagataca------tcacttacacaat 50659995  T
Q  146 gaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||| | ||||||||||  ||||||| ||  |||||||||    
T  50659994 gaaccaaaaaaatcaattgtttctaataataaggaccagagggagta 50659948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 50100345 - 50100207
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatga-ctttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccactta 139  Q
    |||||||||||||||||||| |||| ||||  || | ||| || |||||||| || ||||||||||||||||| ||||||||||||||      ||||||    
T  50100345 atactccctccggtccttattataaaaaaataattaacttgtttgattcatagaaaaattaacgtatcttattataaatatagactagatacatcactta 50100246  T
Q  140 tacaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||| |||||||| ||||||||||| |||||||    
T  50100245 tacaatgaactaaaaaagtcaattgtttcttataataag 50100207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 21944295 - 21944416
Alignment:
Q  54 tccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaa 148  Q
    |||||||||||| ||||||||||  ||||||||||| |||||| ||||||||| |||||||| |||| |||||||||||     ||||||| |||| |||    
T  21944295 tccggtccttattataagaaaaaattgactttttaggttcatagaataattaatgtatcttagtgtagatatagactagatacaccacttacacaaggaa 21944394  T
Q  149 ccaaaaaagttaattgtttctt 170  Q
    |||||||| | |||||||||||    
T  21944395 ccaaaaaaatcaattgtttctt 21944416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 31376325 - 31376174
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| | |||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||      ||||||     
T  31376325 atactccctccggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatcttcttataaatatagactagatacatcacttac 31376226  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    | |||||||| ||||||| || |||||||| ||||||| || ||||||||||    
T  31376225 ataatgaacctaaaaagtcaaatgtttcttataataaggaccggagggagta 31376174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 46220365 - 46220450
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||| |||||||||||| ||||||||||  ||| |||||| ||||||| ||||||||| ||||||||||||||||||| |||||    
T  46220365 tactccatccggtccttattataagaaaaaattgattttttatattcatagaataattaatgtatcttattgtaaatatatactag 46220450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 39617061 - 39616909
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| | |||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||      ||||||     
T  39617061 atactccctccggtccttattacaagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttac 39616962  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    | ||||||||  |||||| || |||||||| ||||||| || |||||||||||    
T  39616961 ataatgaaccttaaaagtcaaatgtttcttataataaggaccggagggagtag 39616909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 53703728 - 53703880
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||      ||||||     
T  53703728 atactccctccggtccttattataagaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttac 53703827  T
Q  141 acaatgaaccaaaaaagttaa-ttgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| |||| || || || |||||| ||||||| || ||||||||||    
T  53703828 acaatgaacctaaaaggtcaacttttttcttataataaggaccggagggagta 53703880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 24489461 - 24489377
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||| ||||||| |||||| |||| ||| |||||| ||||||| ||||||||| ||||||||| ||||||||| |||||    
T  24489461 tactccctccgatccttattataagacaaagttga-tttttaaattcatagaataattaatgtatcttatagtaaatataaactag 24489377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 19227458 - 19227372
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||||||||| |||||||| |  ||| ||||| | |||||| |||||||||  |||||| || ||||||||||||||    
T  19227458 atactccctccggtccttattataagaaacaattgatttttttggttcatagaataattaatttatcttgttataaatatagactag 19227372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 44118333 - 44118247
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||| |||| ||||||||| |||||||| |  ||||||||||||||||| | |||||||| |||| || || ||||||||||||||    
T  44118333 atacttcctctggtccttattataagaaacaattgactttttagattcattatataattaatgtatattgttataaatatagactag 44118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 48346599 - 48346449
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||| ||||||| ||||||||    | ||||||||||||||| || ||||||| ||||||| || ||||||||||||||      |||||| |    
T  48346599 tactccctccgatccttattataagaaactttttactttttagattcattaagtaattaatgtatcttgttataaatatagactagatacatcacttaca 48346500  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
     ||| |||  ||||||| ||  |||| || |||||||||||||||||||||    
T  48346499 taataaacttaaaaagtcaaaagttttttataataagaacgggagggagta 48346449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 2544550 - 2544606
Alignment:
Q  134 cacttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggag 190  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||| || ||||||||    
T  2544550 cacttatacaatgaatctaaaaagtcaattgtttcttgtaataaggaccggagggag 2544606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 31376276 - 31376324
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  31376276 atgaaccaaaaaagtcaattgtttcttgtaataaggaccggagggagta 31376324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 39617012 - 39617060
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  39617012 atgaaccaaaaaagtcaattgtttcttgtaataaggaccggagggagta 39617060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 21662884 - 21662933
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||  | ||||||||||| |||||||||||||||||    
T  21662884 atactccctccggtcctatttataagaaaaagttgactttttagattcat 21662933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 48643753 - 48643668
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||| |||||||| | |||||| |  |||||||||||||||||  ||||||||| |||| |  || ||||||||||||||    
T  48643753 tactccctccagtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatatagactag 48643668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 2544491 - 2544435
Alignment:
Q  137 ttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||| || |||||||||||    
T  2544491 ttattcaatgaacctaaaaagtcaattgtttcttataataaggaccggagggagtag 2544435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 53703777 - 53703729
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  53703777 atgaaccaaaaaagtcaattgtttcttataataaggaccggagggagta 53703729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 27363276 - 27363229
Alignment:
Q  81 actttttagattcataaaataattaacgtatcttattgtaaatataga 128  Q
    ||||||||||||||| || ||||||||||||||| || ||||||||||    
T  27363276 actttttagattcattaagtaattaacgtatcttgttataaatataga 27363229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 48643698 - 48643753
Alignment:
Q  137 ttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||| ||||||| | ||||||| ||||||||||||||||||| || ||||||||||    
T  48643698 ttattcaatgaatctaaaaagtcaattgtttcttgtaataaggactggagggagta 48643753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 53442056 - 53441997
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaa 106  Q
    ||||||||||||||||  | ||||||||||| |||||||||| ||||||  |||||||||    
T  53442056 tactccctccggtcctatttataagaaaaagttgactttttaaattcattgaataattaa 53441997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 31376173 - 31376222
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  31376173 atactccctccggtccttattataagaaacatttgactttttaggttcat 31376222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 51516957 - 51517002
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagatt 92  Q
    ||||||||||||||||  | ||||||||||| ||||||||||||||    
T  51516957 tactccctccggtcctatttataagaaaaagttgactttttagatt 51517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 2544436 - 2544484
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  2544436 tactccctccggtccttattataagaaacaattgactttttaggttcat 2544484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 19227409 - 19227457
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||| | ||||||||||| ||||||| || ||||||||||    
T  19227409 atgaaccaaaaaaatcaattgtttcttataataaggaccggagggagta 19227457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 30438741 - 30438893
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    ||||||||| || ||||||| ||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||      |||||||    
T  30438741 atactcccttcgatccttattataagaaaaagttgactttttagattcatagaataattaatgtattttattgtaaatatagactagatacatcacttat 30438840  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    ||||| ||||||||||||||||| |||||| ||||||| |  |||||||||||    
T  30438841 acaataaaccaaaaaagttaattatttcttataataaggatcggagggagtag 30438893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 28605720 - 28605569
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttat 140  Q
    ||||||| |||||||||||| ||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||  ||       ||||||     
T  28605720 atactccatccggtccttattataagaaaaagctgaccttttagattcatagaataattaatgtatcttattgtaaatatagtttaaatacatcacttac 28605621  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||||||||||||||||||||||| ||||||| ||  |||||||||    
T  28605620 acaatgaaccaaaaaagttaattgtttcttataataaggaccagagggagta 28605569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 12217635 - 12217526
Alignment:
Q  53 ctccggtccttataataagaaaaagat-gactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatg 146  Q
    ||||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||      ||||||||||||     
T  12217635 ctccggtccttattataagaaaaaaattgactttttagattcatagaataattaatgtatcttattgtaaatatagactagatacatcacttatacaata 12217536  T
Q  147 aaccaaaaaa 156  Q
    ||||||||||    
T  12217535 aaccaaaaaa 12217526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 10145364 - 10145279
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||| ||||| |||| |||| |||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  10145364 tactcccttcggtctttattataaaaaaaaattgactttttaggttcataaaataattaatgtatcttattgtaaatatagactag 10145279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 12605756 - 12605675
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    ||||||||||| |||| ||||||||||| |||| |||||| |||||  ||||||||| ||||||||||||||||||||||||    
T  12605756 tccctccggtctttattataagaaaaagttgacattttaggttcatggaataattaatgtatcttattgtaaatatagacta 12605675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 2913331 - 2913482
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactagccac-----ttat 140  Q
    |||||||||||||||||||| ||||| || |  |||||||||||||||||  ||||||||| ||   |  || ||||||||||||||  ||     ||||    
T  2913331 atactccctccggtccttattataagcaacatttgactttttagattcattgaataattaatgttcgtcgttataaatatagactagatacattacttat 2913430  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| ||||||| ||||||| ||| ||||||| || ||||||||||    
T  2913431 acaatgaacctaaaaagtcaattgttgcttataataaggaccggagggagta 2913482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 9343134 - 9343204
Alignment:
Q  62 ttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||| |||||||| |  |||||||||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  9343134 ttattataagaaataattgactttttagattcatagaataattaatgtatcttgttataaatatagactag 9343204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 3847537 - 3847472
Alignment:
Q  67 ataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||||  ||||||||||| |||||| |||||||||  ||| ||||| ||||||||||||||    
T  3847537 ataagaaaaaagtgactttttaggttcatataataattaatatattttattataaatatagactag 3847472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 23916276 - 23916228
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||||||||||||||||| |||||||| |  |||||||||||||||||    
T  23916276 tactccctccggtccttattataagaaacaattgactttttagattcat 23916228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 33127939 - 33127850
Alignment:
Q  46 atactccctccggtcctta---taataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||| |||||||||||   |||||||||| |  |||||||||||||| ||  ||||||||| ||||||| ||  |||||||||||||    
T  33127939 atactccatccggtccttaatataataagaaacaattgactttttagatttattgaataattaatgtatcttgttacaaatatagactag 33127850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 2230499 - 2230431
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatctt 114  Q
    |||||||||||||||||  | |||||||||   |||||||||||||||||  | ||||||| |||||||    
T  2230499 atactccctccggtcctatttataagaaaactttgactttttagattcattgagtaattaatgtatctt 2230431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 23916225 - 23916277
Alignment:
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    |||||||| | ||||||| ||||||||||| ||||||| || |||||||||||    
T  23916225 acaatgaatctaaaaagtcaattgtttcttataataaggaccggagggagtag 23916277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 36103543 - 36103392
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||||| |||||||||||||||||||| ||||      ||||||     
T  36103543 atactccctccggtccttattataagaaaaagttgattttttaggttcatagaataattaatgtatcttattgtaaatatagtctagatacatcacttac 36103444  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||| ||||| ||||||||||| || ||||||| || ||||||||||    
T  36103443 acaatgaactaaaaatgttaattgtttattataataaggaccggagggagta 36103392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 15239842 - 15239705
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||  ||||||||||||||||||||||||      ||||||     
T  15239842 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatatatcttattgtaaatatagactagatacatcacttac 15239743  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||||| ||| | ||||||||||| |||||||    
T  15239742 acaatgaaccaacaaaatcaattgtttcttataataag 15239705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 28143895 - 28143767
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||      ||||||     
T  28143895 atactccctccggtccttattataagaaaaagttgactttttaggttcatagaataattaatgtatcttattataaatatagactagatacatcacttac 28143796  T
Q  141 acaatgaaccaaaaaagttaattgtttct 169  Q
    |||||||||||||||| | ||||||||||    
T  28143795 acaatgaaccaaaaaaatcaattgtttct 28143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 40534663 - 40534517
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||| |||| ||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||      || ||||    
T  40534663 atactccctccggtccttattataagataaagttgactttttaggttcatagaataaataatgtatcttattgtaaatatagactagatacatcatttat 40534564  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagg 187  Q
    ||||||||| |||||| | ||||||||||| ||||||| || |||||    
T  40534563 acaatgaactaaaaaaatcaattgtttcttataataaggaccggagg 40534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 45076340 - 45076477
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||| |||||| ||||||||| |||| |||||||| |||||||||||      ||||||     
T  45076340 atactccctccggtccttattataagaaaaaattgattttttaggttcatagaataattaatgtattttattgtacatatagactagatacatcacttac 45076439  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||||||||||| |||||||| || |||||||    
T  45076440 acaatgaaccaaaaaagtcaattgttttttataataag 45076477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 23464638 - 23464522
Alignment:
Q  55 ccggtccttataataagaaaaagatgact-ttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaa 148  Q
    ||||||||||| ||||||||||| ||| | |||||| |||||| ||||||||| |||||||||||||||||||||||||      | |||||||||||||    
T  23464638 ccggtccttattataagaaaaagttgattattttaggttcatagaataattaatgtatcttattgtaaatatagactagatacatctcttatacaatgaa 23464539  T
Q  149 ccaaaaaagttaattgt 165  Q
    |||||||||||||||||    
T  23464538 ccaaaaaagttaattgt 23464522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 27306725 - 27306843
Alignment:
Q  62 ttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag---ccacttatacaatgaaccaaaaaagt 158  Q
    |||| ||||||||||| ||||||||||| |||||  ||||||||| |||||||||||||||||||||||||   | ||||| ||||| |||||||||| |    
T  27306725 ttattataagaaaaagttgactttttaggttcattgaataattaatgtatcttattgtaaatatagactagatacgacttacacaataaaccaaaaaaat 27306824  T
Q  159 taattgtttcttgtaataa 177  Q
     ||||||||||| ||||||    
T  27306825 caattgtttcttataataa 27306843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 27311726 - 27311575
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||||||||||| | |||||| |  ||| |||||||||| ||  ||||||||||||||||| || ||||||||||||||      || || ||    
T  27311726 tactccctccggtccttatcacaagaaacaattgattttttagatttattgaataattaacgtatcttgttataaatatagactagatatatcatttgta 27311627  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagtag 193  Q
    ||||||||| ||||||| ||||||||||| |||||||||   ||||||||||    
T  27311626 caatgaacctaaaaagtcaattgtttcttataataagaatccgagggagtag 27311575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 25795388 - 25795237
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| | |||||| |  |||||||||||||||||  ||||||||| |||| |  || ||||||||||||||       |||||     
T  25795388 atactccctccggtccttattacaagaaacaattgactttttagattcattgaataattaatgtatttcgttataaatatagactagatacattacttac 25795289  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    || || |||| ||||||| ||||||||||| ||||||| || ||||| ||||    
T  25795288 acgattaacctaaaaagtcaattgtttcttataataaggaccggaggtagta 25795237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 9373528 - 9373459
Alignment:
Q  62 ttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    |||| |||||||| |  |||||||||| ||||||  ||||||||||||||||| ||||||||||||||||    
T  9373528 ttattataagaaacaattgactttttaaattcattgaataattaacgtatcttgttgtaaatatagacta 9373459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 12873721 - 12873786
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtat 111  Q
    |||||||||||| ||||| | ||||||||||| ||||||||||||||||| || ||||||| ||||    
T  12873721 atactccctccgatcctttttataagaaaaagttgactttttagattcattaagtaattaatgtat 12873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 28249062 - 28249018
Alignment:
Q  67 ataagaaaaagatgactttttagattcataaaataattaacgtat 111  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  28249062 ataagaaaaagttgactttttagattcattaaataattaatgtat 28249018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 25795332 - 25795387
Alignment:
Q  137 ttatacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||| ||||||| | ||||||| ||||||||||||||||||| || ||||||||||    
T  25795332 ttattcaatgaatctaaaaagtcaattgtttcttgtaataaggaccggagggagta 25795387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 13775861 - 13775804
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataat 103  Q
    |||||||||||||||||  | |||||| |||| ||||||||||||| ||| |||||||    
T  13775861 atactccctccggtcctatttataagagaaagttgactttttagatacattaaataat 13775804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 41153261 - 41153212
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||| ||||  | ||||||||||| |||||||||||||||||    
T  41153261 atactccctccgatcctatttataagaaaaagttgactttttagattcat 41153212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 7943589 - 7943521
Alignment:
Q  47 tactccctccggtccttataataagaaaaagat-gactttttagattcataaaataattaacgtatctt 114  Q
    ||||||||||||||||  | |||||||||| || ||||||||||||||||  ||||||| | |||||||    
T  7943589 tactccctccggtcctatttataagaaaaaaattgactttttagattcattgaataattgatgtatctt 7943521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 52279383 - 52279233
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||  |||||||||||||||||||||| |      |||||| |    
T  52279383 tactccctccgatccttattataagaaaaagttgactttttagattcatataataattaatatatcttattgtaaatatagacttgatacatcacttaca 52279284  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| | ||||| ||||  ||||||| ||  |||||||||    
T  52279283 caatgaaccaaaaaaatcaattgcttctaataataaggaccagagggagta 52279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 45977243 - 45977098
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttata 141  Q
    |||||||| ||||  |||| ||||||||||| ||||||||||  || ||| ||||||||| |||||||||||||||||||||||||      ||| ||||    
T  45977243 tactcccttcggtttttattataagaaaaagttgactttttacgtttatagaataattaatgtatcttattgtaaatatagactagatacatcacctata 45977144  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagg 187  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||    
T  45977143 caataaaccaaaaaagttaattgtttcttataataaggaccggagg 45977098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 13320450 - 13320302
Alignment:
Q  49 ctccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttataca 143  Q
    |||||||| ||| |||| ||||||||||| |||||||||||||||||| |||||||||  |||||||||||||||||||  ||       || ||| |||    
T  13320450 ctccctccagtctttattataagaaaaagttgactttttagattcatagaataattaatatatcttattgtaaatatagtttaaatacatcatttacaca 13320351  T
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    || ||| |||||| ||||||||||||| |||||||||| ||||||||||    
T  13320350 ataaacaaaaaaaattaattgtttcttataataagaaccggagggagta 13320302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 15699462 - 15699610
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||    ||| |||||||||||||  | ||||||| ||||||| |||||||||||||||||      |||||||    
T  15699462 atactccctccggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcacttat 15699561  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggaggga 189  Q
    ||||| |||| ||||| | ||||||||| | ||||||| ||||||||||    
T  15699562 acaataaacctaaaaattcaattgtttcatataataaggacgggaggga 15699610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 13770741 - 13770858
Alignment:
Q  80 gactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaaccaaaaaagttaattgtttcttgtaa 174  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||||||      |||||| ||||| ||  |||||||| || |||||||| |||    
T  13770741 gactatttagattcatagaataattaatgtatcttattgtaaatatagactagatacatcacttacacaataaattaaaaaagtaaactgtttcttataa 13770840  T
Q  175 taagaacgggagggagta 192  Q
    ||||||| ||||||||||    
T  13770841 taagaaccggagggagta 13770858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 44224300 - 44224404
Alignment:
Q  79 tgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaaccaaaaaagttaattgtttcttgta 173  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||      ||||| ||||||||||||||||| |||||| ||| || ||    
T  44224300 tgactttttagattcatagaataattaatgtatcttattgtaaatatagtctagatacatcacttgtacaatgaaccaaaaaaattaattattttttata 44224399  T
Q  174 ataag 178  Q
    |||||    
T  44224400 ataag 44224404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 29438169 - 29438265
Alignment:
Q  79 tgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaatgaaccaaaaaagttaattgtttctt 170  Q
    ||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||      |||||| ||||||||| |||||||| |||||||||||    
T  29438169 tgactttttaggttcatagaataattaatgtatcttattgaaaatatagactagatacatcacttacacaatgaactaaaaaagtcaattgtttctt 29438265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 27687987 - 27687840
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttatacaa 144  Q
    ||||| || ||||| | ||||||||||  | ||||||||  || ||| ||||||||| |||||||||||||||||||||||||      |||||| | ||    
T  27687987 tccctgcgatccttgttataagaaaaaattaactttttaagtttatagaataattaatgtatcttattgtaaatatagactagatacatcacttacataa 27687888  T
Q  145 tgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||| |||||| | |||| |||||| |||||||||| ||||||||||    
T  27687887 tgaactaaaaaattcaattatttcttataataagaaccggagggagta 27687840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 51590428 - 51590579
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||| ||| |  ||||||||| | |||||| ||||||||| ||||||| || ||||||||||||||      ||||||     
T  51590428 atactccctccggtccttattataaaaaacaattgacttttttggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttac 51590527  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||| | |||| || || | |||||| ||||||| || ||||||||||    
T  51590528 acaatgaatctaaaaggtcaactttttcttataataaggaccggagggagta 51590579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 19998409 - 19998546
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| ||||||||    |||||||||| ||||||  | |||||||  |||||| |||||||||||||||||      ||||||     
T  19998409 atactccctccggtccttattataagaaacttttgactttttatattcattgagtaattaatatatcttgttgtaaatatagactagatacatcacttac 19998508  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||| | ||||| | ||||||||||| |||||||    
T  19998509 acaatgaatctaaaaattcaattgtttcttataataag 19998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 32837657 - 32837720
Alignment:
Q  69 aagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    ||||||||| ||||||||||| |||||| ||||||||| |||| ||||||| ||||||||||||    
T  32837657 aagaaaaagttgactttttaggttcatagaataattaatgtattttattgttaatatagactag 32837720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 51590580 - 51590531
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  51590580 atactccctccggtccttattataagaaaaagttgaccttttagattcat 51590531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 31050249 - 31050385
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta-----gccacttata 141  Q
    ||||||||| ||||||||| ||||||||    |||||||||||||||||    ||||||| |||| || ||||||||||||||||       |||||| |    
T  31050249 tactccctctggtccttattataagaaacttttgactttttagattcattgtgtaattaatgtattttgttgtaaatatagactaaatacatcacttaca 31050348  T
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||| |||| ||||||| ||||||||||| |||||||    
T  31050349 caataaacctaaaaagtcaattgtttcttataataag 31050385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 25238723 - 25238649
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgta 120  Q
    ||||||||||| |||||||| |||| ||| |  ||||||||||| |||||| ||||||||| ||||||| |||||    
T  25238723 atactccctcctgtccttattataaaaaacaattgactttttaggttcatagaataattaatgtatcttgttgta 25238649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 13321758 - 13321727
Alignment:
Q  147 aaccaaaaaagttaattgtttcttgtaataag 178  Q
    ||||||||||||||||||||||||||||||||    
T  13321758 aaccaaaaaagttaattgtttcttgtaataag 13321727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 13321716 - 13321798
Alignment:
Q  50 tccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||| ||||||| | |||||| |  | ||||||| | || ||||||||||||| ||||||| || ||||||||||||||    
T  13321716 tccctccgatccttattacaagaaacaattaacttttttggtttataaaataattaatgtatcttgttataaatatagactag 13321798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 48565677 - 48565635
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgacttttta 88  Q
    |||||||||||||||||||| ||||||||||| | ||||||||    
T  48565677 atactccctccggtccttattataagaaaaagttaacttttta 48565635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 18038838 - 18038789
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||||| |||| ||| |  |||||||||||||||||    
T  18038838 atactccctccggtccttattataaaaaacatttgactttttagattcat 18038789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 26924211 - 26924260
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||||||||||||||||  | ||||||||||| |||||||||| ||||||    
T  26924211 atactccctccggtcctatttataagaaaaagttgactttttaaattcat 26924260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 50155448 - 50155399
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    ||||| |||||||||||  | ||||||||||| |||||||||||||||||    
T  50155448 atacttcctccggtcctatttataagaaaaagttgactttttagattcat 50155399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 52030963 - 52031004
Alignment:
Q  145 tgaaccaaaaaagttaattgtttcttgtaataagaacgggag 186  Q
    |||| |||||||||||||||||| |||||||||| |||||||    
T  52030963 tgaatcaaaaaagttaattgttttttgtaataaggacgggag 52031004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 29256747 - 29256699
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcat 95  Q
    |||| |||||||||||  | ||||||||||| |||||||||||||||||    
T  29256747 tacttcctccggtcctatttataagaaaaagttgactttttagattcat 29256699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 34174943 - 34174899
Alignment:
Q  134 cacttatacaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||| |||||||||| ||||||| ||||||||||| |||||||    
T  34174943 cacttacacaatgaacctaaaaagtcaattgtttcttataataag 34174899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 51590477 - 51590429
Alignment:
Q  144 atgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||||||||||| |||||||| || ||||||| || ||||||||||    
T  51590477 atgaaccaaaaaagtcaattgttttttataataaggaccggagggagta 51590429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 25766 - 25618
Alignment:
Q  45 gatactccctccggtccttataataagaaaaagatgac-tttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccactt 138  Q
    |||||| |||||||||||||| ||||||||||| |||| ||||||  |||||| ||||||||| |||||||||| ||||||||||||||      |||||    
T  25766 gatacttcctccggtccttattataagaaaaagttgacttttttacgttcatagaataattaatgtatcttattataaatatagactagatacatcactt 25667  T
Q  139 atacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagg 187  Q
    ||| ||| ||||||||||||||||||||| || ||||||| || |||||    
T  25666 atataataaaccaaaaaagttaattgttttttataataaggaccggagg 25618  T

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Target: scaffold0059 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 26737 - 26585
Alignment:
Q  45 gatactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccactta 139  Q
    ||||||||||||||||||||| ||||||||    ||| |||||||||||||  | ||||||| ||||||| |||||||||||||||||      ||||||    
T  26737 gatactccctccggtccttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcactta 26638  T
Q  140 tacaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
     | |||||||| ||||||| |||  |||||| ||||||| || ||||||||||    
T  26637 cataatgaacctaaaaagtcaatcctttcttataataaggaccggagggagta 26585  T

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Target: scaffold0767 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 3807 - 3944
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||| |||||||| |  ||||||||| |||||||  |||| |||| | ||||  || ||||||||||||||      ||||||     
T  3807 atactccctccggtccttattataagaaacaattgacttttttgattcattgaatacttaatgcatctcgttataaatatagactagatacatcacttac 3906  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataag 178  Q
    |||||||||| ||||||| ||||||||||| |||||||    
T  3907 acaatgaacctaaaaagtcaattgtttcttataataag 3944  T

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Target: scaffold0767; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 3858 - 3808
Alignment:
Q  142 caatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    ||||||| ||||||||| ||||||||||| ||||||| || ||||||||||    
T  3858 caatgaatcaaaaaagtcaattgtttcttataataaggaccggagggagta 3808  T

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Target: scaffold0023 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 112973 - 112822
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag-----ccacttat 140  Q
    |||||||||||||||||||  |||||||| |  |||||||||||||| ||  ||||||||| ||||||| || |||||||||| |||      || || |    
T  112973 atactccctccggtccttaacataagaaacaattgactttttagatttattgaataattaatgtatcttgttataaatatagattagatacatcatttgt 112874  T
Q  141 acaatgaaccaaaaaagttaattgtttcttgtaataagaacgggagggagta 192  Q
    |||||||||| |||| || ||||||||||| ||||||| ||  |||||||||    
T  112873 acaatgaacctaaaacgtcaattgtttcttataataaggacccgagggagta 112822  T

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Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 40341 - 40255
Alignment:
Q  46 atactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||||||||| ||||||||    |||||||||||||||||  | |||||||  |||||| |||||||||||||||||    
T  40341 atactccctccggtccttattataagaaacttttgactttttagattcattgagtaattaatatatcttgttgtaaatatagactag 40255  T

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Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 19308 - 19377
Alignment:
Q  59 tccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagacta 131  Q
    ||||||| ||||||||||| |||||||||||||||||   | ||||||  |||||||||||||||||||||||    
T  19308 tccttattataagaaaaagttgactttttagattcat---agaattaatatatcttattgtaaatatagacta 19377  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 17384 - 17469
Alignment:
Q  47 tactccctccggtccttataataagaaaaagatgactttttagattcataaaataattaacgtatcttattgtaaatatagactag 132  Q
    |||||||||||||| |||| ||||||||    ||| |||||||||||||  | ||||||| ||||||| | |||||||||||||||    
T  17384 tactccctccggtctttattataagaaacttttgattttttagattcattgagtaattaatgtatcttgtagtaaatatagactag 17469  T

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