View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_low_17 (Length: 254)
Name: NF18864_low_17
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 20756989 - 20757213
Alignment:
| Q |
13 |
aatatgcagtaacttaattacaatttgaaaccattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtt |
112 |
Q |
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| T |
20756989 |
aatatgcagtaacttaattacaatttgaaaccattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtt |
20757088 |
T |
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| Q |
113 |
tttcttttgaagatcctttgaattaaagtaaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagtatatat |
212 |
Q |
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| T |
20757089 |
tttcttttgaagatcctttgaattaaagtaaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagagatgattctgaagtatagat |
20757188 |
T |
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| Q |
213 |
gcttctgtttgctgtgtcaattttt |
237 |
Q |
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| T |
20757189 |
gcttctgtttgttgtgtcaattttt |
20757213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 20752431 - 20752617
Alignment:
| Q |
51 |
tttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagtaaccaaata |
150 |
Q |
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| T |
20752431 |
tttacctgtaattgtatttttagtgaggaagtcatggaatccacatattgttgtggagtatttttcttttgaagatccattgagttatagtaaccaaata |
20752530 |
T |
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| Q |
151 |
tatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagtatatatgcttctgtttgctgtgtcaattttt |
237 |
Q |
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| T |
20752531 |
tatcattgcttccaatcactatagcaaatatggattttgagaggtgtttctgaagtgtagatgcttctgtttgttgtgtcaattttt |
20752617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 20800293 - 20800457
Alignment:
| Q |
42 |
accattgtgtttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagt |
141 |
Q |
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| T |
20800293 |
accattgtgcttacctgtagttgcacttttagtgaagaagccatggatttgacaaactgttgtggggtgtttttcttttgaagatcctttgaattgaagt |
20800392 |
T |
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| Q |
142 |
aaccaaatatatcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctgaagt |
206 |
Q |
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| T |
20800393 |
aatcaaagatatcattgttgccaatcacaacaaagaagatggattctgagaggtgtttctgaagt |
20800457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 40640616 - 40640466
Alignment:
| Q |
52 |
ttacctgtagttgcacttttagtgaggaagccatggaatccacatattgttgtggagtgtttttcttttgaagatcctttgaattaaagtaaccaaatat |
151 |
Q |
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||||||||||||||| ||| |||||| || ||||||||| ||||| |||||||| || |||||||| |||| || ||| | ||| || ||||| | |
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| T |
40640616 |
ttacctgtagttgcagtttgagtgagaaaagcatggaatcaacatactgttgtggggtatttttcttacgaagttctgatgactcaaaatatccaaagag |
40640517 |
T |
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| Q |
152 |
atcattgcttccaatcacaacagcaaatatggattttgagaggtgtttctg |
202 |
Q |
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| T |
40640516 |
atcattgtttccaatcacaacagcaaaaattgattttgagagatgtttctg |
40640466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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