View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18864_low_2 (Length: 548)

Name: NF18864_low_2
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18864_low_2
NF18864_low_2
[»] chr7 (3 HSPs)
chr7 (16-529)||(3466993-3467503)
chr7 (31-95)||(5232780-5232844)
chr7 (44-96)||(33895469-33895521)
[»] chr5 (2 HSPs)
chr5 (44-96)||(29161167-29161219)
chr5 (20-96)||(5270604-5270679)
[»] chr6 (1 HSPs)
chr6 (49-96)||(32847509-32847556)
[»] chr8 (2 HSPs)
chr8 (49-96)||(30051697-30051744)
chr8 (59-96)||(11443406-11443443)
[»] chr4 (2 HSPs)
chr4 (49-96)||(5912693-5912740)
chr4 (51-95)||(10411761-10411805)
[»] chr3 (2 HSPs)
chr3 (62-95)||(25181508-25181541)
chr3 (44-96)||(32471646-32471698)
[»] scaffold0024 (1 HSPs)
scaffold0024 (49-101)||(29992-30044)


Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 3467503 - 3466993
Alignment:
Q  16 atgtcattttgaagtaaaaagcaagcgccatagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaagctatatgtttatttattga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3467503 atgtcattttgaagtaaaaagcaagcgccatagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaagctatatgtttatttattga 3467404  T
Q  116 caaatgtaaaatgtttgttataaaaatttgacgaaaaacgtatttggctacactaatttgggtgatgcagaaattacatcatcgctttgtgacatatagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3467403 caaatgtaaaatgtttgttataaaaatttgacgaaaaacgtatttggctacactaatttgggtgatgcagaaattacatcatcgctttgtgacatatagt 3467304  T
Q  216 taacactttgtgatattgacaggtaccattgtttcataacttggatgatcttattcttgacaacatctgtgacagggtgaagcctctagtcttctctaga 315  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3467303 taacactttgtgatattgacaggtaccattgtttcacaacttggatgatcttattcttgacaacatctgtgacagggtgaagcctctagtcttctctaga 3467204  T
Q  316 gatgaaaaggtattgattatatgattaatcatataaactttttaattctttgaaaaaggacttcaaaatttccatcatgg-tttttaattctttcatata 414  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  3467203 gatgaaaaggtattgattata----taatcatataaactttttaattctttgaaaaaggacttcaaaatgtccatcatggttttttaattcttacatata 3467108  T
Q  415 tatccttgtgaaacagataattagagaaggtgatcctgtaccaaggatggtgttcattgttcgcggacgcataaagcgaaaccaaagtctaagcaaagga 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3467107 tatccttgtgaaacagataattagagaaggtgatcctgtaccaaggatggtgttcattgttcgcggacgcataaagcgaaaccaaagtctaagcaaaggc 3467008  T
Q  515 attgtagcaactagt 529  Q
    ||||| || ||||||    
T  3467007 attgtcgcgactagt 3466993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 5232844 - 5232780
Alignment:
Q  31 aaaaagcaagcgccatagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaa 95  Q
    |||||||||| | |||| ||||||||| | | |||||||||||||||||||  |||| |||||||    
T  5232844 aaaaagcaagtgacataacaaaattataaaccgatatatcgtatatgaaccataaaaaaattcaa 5232780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 33895521 - 33895469
Alignment:
Q  44 catagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    |||| ||| ||||| |||||||||||  ||||||||||| |||||||||||||    
T  33895521 cataacaatattataagctgatatattatatatgaaccttaaaataattcaag 33895469  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29161219 - 29161167
Alignment:
Q  44 catagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    |||| ||||||||  |||||||||||| |||||||||||||||||||||||||    
T  29161219 cataacaaaattaaaagctgatatatcatatatgaacctcaaaataattcaag 29161167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 5270679 - 5270604
Alignment:
Q  20 cattttgaagtaaaaagcaagcgccatagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    |||||| ||||||||| |||| | ||||||| |||||| || || |||||| ||||||||| ||| |||||||||||    
T  5270679 catttttaagtaaaaa-caagtgacatagcagaattataagttggtatatcatatatgaacttcagaataattcaag 5270604  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 32847509 - 32847556
Alignment:
Q  49 caaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  32847509 caaaattataagctgatatatcatatatgagcctcaaaataattcaag 32847556  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 30051744 - 30051697
Alignment:
Q  49 caaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    ||||||||| || ||||||||| |||||||| ||||||||||||||||    
T  30051744 caaaattattagttgatatatcatatatgaatctcaaaataattcaag 30051697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 11443443 - 11443406
Alignment:
Q  59 agctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  11443443 agctgatatatcatatatgaacttcaaaataattcaag 11443406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 5912740 - 5912693
Alignment:
Q  49 caaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    ||||||||| || ||||||||  |||||||||||||||||||||||||    
T  5912740 caaaattataagatgatatattatatatgaacctcaaaataattcaag 5912693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 10411805 - 10411761
Alignment:
Q  51 aaattatgagctgatatatcgtatatgaacctcaaaataattcaa 95  Q
    ||||||| || ||||||||| ||| ||||||||||||||||||||    
T  10411805 aaattataagttgatatatcatatgtgaacctcaaaataattcaa 10411761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 25181508 - 25181541
Alignment:
Q  62 tgatatatcgtatatgaacctcaaaataattcaa 95  Q
    ||||||||| ||||||||||||||||||||||||    
T  25181508 tgatatatcatatatgaacctcaaaataattcaa 25181541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 32471698 - 32471646
Alignment:
Q  44 catagcaaaattatgagctgatatatcgtatatgaacctcaaaataattcaag 96  Q
    |||| ||||||||| || ||||||| | |||||||| ||||||||||||||||    
T  32471698 cataacaaaattataagttgatatagcatatatgaatctcaaaataattcaag 32471646  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 30044 - 29992
Alignment:
Q  49 caaaattatgagctgatatatcgtatatgaacctcaaaataattcaagctata 101  Q
    ||||| ||| || |||||||||||||||||||||  |||||||||||| ||||    
T  30044 caaaactataagttgatatatcgtatatgaaccttcaaataattcaagttata 29992  T

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