View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18864_low_4 (Length: 450)
Name: NF18864_low_4
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_low_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 23495688 - 23496119
Alignment:
| Q |
19 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggattatgttaacatggattctagccgtgagaacgatacgagagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495688 |
tattcttaagtgagttcttagatttaagaatcgattattcctgagttatacaattggagcatgttaacatggattctagccgtgagaacgatacgagagt |
23495787 |
T |
|
| Q |
119 |
tttgttctttgcannnnnnnctcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495788 |
tttgttctttgcatttttttttcactcatcagagccaataatattacatttgatgtagatgtagacatgtaataacctcccttttcaccaatgaagatgc |
23495887 |
T |
|
| Q |
219 |
tcaagcagacatgtgataataaacaagtcctatatcaaataatgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
318 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23495888 |
ttaagcagacatgtaataataaacaagtcctatatcaaatactgattcatttcagcatggtcatgtatttcaccatctcattctatctaaaggtccaaaa |
23495987 |
T |
|
| Q |
319 |
tatcattcaatattgcaaagaacatgttggtaattcactacttgaccctctaacctgtttgtcatttagatgcaacatttacaacaaacaaatagaaaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23495988 |
tatcattcaatattgcaaagaacatgttggtaattcactacttgaccctctaacctgtttgtcatttagatgcaacatttacaataaacaaatagaaaaa |
23496087 |
T |
|
| Q |
419 |
caccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23496088 |
caccaacgtggaattgttccatttaacatgtt |
23496119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 37400572 - 37400534
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37400572 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37400534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37533500 - 37533538
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37533500 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37533538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37594724 - 37594762
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37594724 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37594762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37640272 - 37640310
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37640272 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37640310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37697187 - 37697225
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37697187 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37697225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37703068 - 37703106
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37703068 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37703106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 37824295 - 37824333
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
37824295 |
agaataacaccaatgtggaattgttccatttaacatgtt |
37824333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 14553510 - 14553548
Alignment:
| Q |
412 |
agaaaaacaccaacgtggaattgttccatttaacatgtt |
450 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
14553510 |
agaataacaccaatgtggaattgttccatttaacatgtt |
14553548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University