View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_low_6 (Length: 427)
Name: NF18864_low_6
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 5028023 - 5027759
Alignment:
| Q |
18 |
aagaataccatctctttttatattctaccactagtaatagtttatttaatcgacaaaactactggtactagttttttgtattctaaaataaatagcaaat |
117 |
Q |
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| T |
5028023 |
aagaataccatctctttttatattctaccactagtactagtttatttaatcgacaaaactactagtactagttttttgtattctaaaataaatagcaaat |
5027924 |
T |
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| Q |
118 |
attaaca--gnnnnnnntgtatggtcaaagggaccccttagttgactatcaacaatcaaatttcaaatccaaccacgaatttcctacatcaaccccaagc |
215 |
Q |
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| T |
5027923 |
attaacaaagaaaaaaatgtatggtcaaagggaccccttagttgattatcaacaatcaaattccaaatccaaccacgaatttcctacatcaaccccaagc |
5027824 |
T |
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| Q |
216 |
gagtacactatatcttccctgctccatcccgcacgcaataactccaaccccaaaacactcacgtg |
280 |
Q |
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| T |
5027823 |
gagtacactatatcttccctgctccatcccgcacgcaataactccaaccccaaaacactcacgtg |
5027759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 5027688 - 5027630
Alignment:
| Q |
351 |
cacccaccttccctcaacctccgcagcaccccatccatacacctccctaccactcctct |
409 |
Q |
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| T |
5027688 |
cacccaccttccctcaacctccgcagcaccccatccatacacctccctaccactcctct |
5027630 |
T |
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