View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18864_low_8 (Length: 406)
Name: NF18864_low_8
Description: NF18864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18864_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 35868764 - 35868363
Alignment:
| Q |
9 |
atcataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgtttaacatttgttgtcttcttaaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35868764 |
atcataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgttta-catttgttgtcttcttaaaa |
35868666 |
T |
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| Q |
109 |
ttgagcccggacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaa |
208 |
Q |
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| T |
35868665 |
ttgagccctgacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaa |
35868566 |
T |
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| Q |
209 |
agcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc-- |
306 |
Q |
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| T |
35868565 |
agcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgctt |
35868466 |
T |
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| Q |
307 |
---nnnnnnnnnnctttcttatttgattataattttatacacatacattatattacatnnnnnnnntcttttaaacatttactcttccttctcttgcaac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
35868465 |
tttttttttttttttttcttatttgattataattttatacacatacattatattacataaaaaaaatcttttaaacatttactctgccttctcttgcaac |
35868366 |
T |
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| Q |
404 |
ttc |
406 |
Q |
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| T |
35868365 |
ttc |
35868363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 24442965 - 24442669
Alignment:
| Q |
9 |
atcataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgtttaacatttgttgtcttcttaaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24442965 |
atcataggtaactaaatttctcatggttaattatattgttatacacttgtcatttattttcagttttccattatgttta-catttgttgtcttcttaaaa |
24442867 |
T |
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| Q |
109 |
ttgagcccggacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaa |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24442866 |
ttgagccctgacaggctgacaccattgcagttttcttcatacatcagtattgtacagagaagaatacatatcctaattggtgatcaataaaaacaaacaa |
24442767 |
T |
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| Q |
209 |
agcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24442766 |
agcttcttttggactaatggtaccttcaatggattcaagatttcataatctctccccagaagtacatataaactagtgttgagtgctgttgttcttgc |
24442669 |
T |
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