View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_high_1 (Length: 627)
Name: NF18865_high_1
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 609
Target Start/End: Complemental strand, 11660577 - 11659970
Alignment:
| Q |
13 |
aatatgaaaagtttgaaacctcataaacta---atccaaacagagataatttttcaactttgttttaaaatttcaaggaataatataaacgttggagaag |
109 |
Q |
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| T |
11660577 |
aatataaaaagtttgaaacctcataaactactaatccaaactgagataatttttcaatcttgtttttagattacaaggaacaatataaacgtaggagaag |
11660478 |
T |
|
| Q |
110 |
gaatcgaccacaagtttataatcacacgtcaaccaaagattcttccaatcctttttatgatatgatatatctcaataaataacatagtctttgagaaatt |
209 |
Q |
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| T |
11660477 |
gaagcaaccccaagtttataatcacacttcaaccaaagattcttccaactctttttatgatat-----atctcaataaataacatagccgttgagaaatt |
11660383 |
T |
|
| Q |
210 |
ggtgtgattagaagaagtgttacccacgaaagaagaaaagaaacctgtaattgtc-----------ctgaaaaatgtcactaacactaacaaaactaggc |
298 |
Q |
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| T |
11660382 |
ggtgtgattagaagaagtgttacccaagaaagaagaaaagaaacccataattgtcgcattattgtcctgaaaaatgccactagcattgacaaaactaggc |
11660283 |
T |
|
| Q |
299 |
ttacccaaatagcaccatcaatgttttctttgatccacctacaacaagtcttattctaaatttcctccttaacaaggggagtaactctatgatgagatgt |
398 |
Q |
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| T |
11660282 |
ttacccaaatagcaccatcaatgttttctttgatccacctacaacaagtcttattccaaatttcctgcttaacaaggggagtaactctatgatgagatgt |
11660183 |
T |
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| Q |
399 |
tacaacaaaatcttttagaattgagaagcaatc-atgtaatacacatagtttctttttaaagacttccaaatcaagataataaagagaaaactaaacata |
497 |
Q |
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| T |
11660182 |
tacaacaaaatcttttagaattgagaagcaatcaatgtaatacacatagtttctttttaaagacttccaaatcaagataataaagagaaaactaaacata |
11660083 |
T |
|
| Q |
498 |
caatacttttttaaaaaacactt-tctgtttcctacaatgacaaatcacccnnnnnnntgtcatcgataatagataaaattagatattttctagagtact |
596 |
Q |
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| T |
11660082 |
caatacttttttaaaaaacacttatctgtttcctacaatgacaaatcacccaaaaaaatgtcatcgataatagataaaattagatattttctagagtact |
11659983 |
T |
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| Q |
597 |
ctagtgccagtgt |
609 |
Q |
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| T |
11659982 |
ctagtgccggtgt |
11659970 |
T |
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