View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_high_13 (Length: 297)
Name: NF18865_high_13
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 15843549 - 15843786
Alignment:
| Q |
41 |
atgatgatgatgtaaactgtaacaagcttcattgtattatttgattaatagcggaggatgagtagtagggttacgattgcacaagcttctataaaacttt |
140 |
Q |
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| T |
15843549 |
atgatgatgatgtaaactgtaacaagcttcattgtattatttgattaatagcggaggatgagtagtagggtaacgattgcacaagcttctataaaacttt |
15843648 |
T |
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| Q |
141 |
atgaatagcaaaggatgttaatttgagaatatggatgggattagggttatttataacgtcaatataaaagtttttgggcttatctagcggcaattctcat |
240 |
Q |
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| T |
15843649 |
atgaatagcaaaggatgttaatttgagaatatgaatgggattagggttatttataacgtcaatataaaagtttttgggcttatctagcggcaattctcat |
15843748 |
T |
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| Q |
241 |
taagtaacaaaattgaggtaacaacaataagattatgc |
278 |
Q |
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| T |
15843749 |
taagtaacaacattgaggtaacaacaataagattatgc |
15843786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 15848289 - 15848526
Alignment:
| Q |
41 |
atgatgatgatgtaaactgtaacaagcttcattgtattatttgattaatagcggaggatgagtagtagggttacgattgcacaagcttctataaaacttt |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15848289 |
atgatgatgatgtaaactgtaacaagcttcattgtattatttgattaatagcggaggatgagtagtagggtaacgattgcacaagcttctataaaacttt |
15848388 |
T |
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| Q |
141 |
atgaatagcaaaggatgttaatttgagaatatggatgggattagggttatttataacgtcaatataaaagtttttgggcttatctagcggcaattctcat |
240 |
Q |
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| T |
15848389 |
atgaatagcaaaggatgttaatttgagaatatgaatgggattagggttatttataacgtcaatataaaagtttttgggcttatctagcggcaattctcat |
15848488 |
T |
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| Q |
241 |
taagtaacaaaattgaggtaacaacaataagattatgc |
278 |
Q |
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| T |
15848489 |
taagtaacaacattgaggtaacaacaataagattatgc |
15848526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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