View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_high_18 (Length: 254)
Name: NF18865_high_18
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 531736 - 531979
Alignment:
| Q |
1 |
cctccaggtttttatctactatttgtggtcaacgcacaaattcctagtgagggtatttgggtacatatactttgattttcttatgataataaataatgat |
100 |
Q |
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| T |
531736 |
cctccaggtttttatctactatttgtggtaaacgcacaaattcctagcgagggtatttgggtacatatactttgattttcttatgataata---aatgat |
531832 |
T |
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| Q |
101 |
aaactacttgtttgtcatgggtaacaatgtggg---------nnnnnnnnnccttgtttcttctaggttttctctaccaatgtaaattgtatttgagata |
191 |
Q |
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||||||||||||| |||||||||||| | |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
531833 |
aaactacttgtttatcatgggtaacattatgggttttttttttctttttctcctagtttcttctaggttttctctaccgatgtaaattgtatttgagata |
531932 |
T |
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| Q |
192 |
ttgtcgaacatgaaatgtgggcaattcaaaatttaaactttggttta |
238 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
531933 |
ttgtcgaacatgaaatgtggacaattcaaaatttaaactttggttta |
531979 |
T |
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