View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_high_5 (Length: 471)
Name: NF18865_high_5
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 867062 - 867517
Alignment:
| Q |
1 |
tatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataggaagttgttattttgatttctaaatta |
100 |
Q |
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| T |
867062 |
tatatatagaaaattgttatcttgatttccaattcattgtgttggggaaattaagattatagtatacatataagaagttgttattttgatttctaaatta |
867161 |
T |
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| Q |
101 |
gtttatgtataaagtaatgttgggtgacatattaagattatatttgactttatgatttgcaaatagcatttttatttaaaactatgttgtttcacaaaca |
200 |
Q |
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| T |
867162 |
gtttatgtttaatgtaatgttgggtgacagattaagattatattagactttatgatttgcaaataacatttttatttaaaattatgtcgtttcacaaaca |
867261 |
T |
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| Q |
201 |
tttatcatatgcgttgtacttac-ggataaacaattttactactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttgctatcaannnnn |
299 |
Q |
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| T |
867262 |
tttatcatatgcgttgtacttacaggatacacaattttaccactatgatcaaaagcaaacatgcatcaaactgtaattaatagttttggtatcaattttt |
867361 |
T |
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| Q |
300 |
nnnnnnnnnnnnnncgcaaattttgttagaagaaaacaagctagtataattccctaaaaagaaaagacagctaacaaaatttcattagtaagaattagtc |
399 |
Q |
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| T |
867362 |
tatttttattttttcgcaaattttgttagaagaaaacaagctagtataattccctaaaaagaaaagacaactaacaaaatttcattagtaagaattagtc |
867461 |
T |
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| Q |
400 |
aggatcatgaattgaaagtgacacaccatgtgaatgttagaacattaggctattat |
455 |
Q |
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| T |
867462 |
aggatcatgaattgaaagtgacacaccatgtgaatgttagaacattaggctattat |
867517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 431
Target Start/End: Complemental strand, 860835 - 860804
Alignment:
| Q |
400 |
aggatcatgaattgaaagtgacacaccatgtg |
431 |
Q |
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| T |
860835 |
aggatcatgaattgaaagtgacacaccatgtg |
860804 |
T |
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