View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_high_6 (Length: 463)
Name: NF18865_high_6
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 30238828 - 30238392
Alignment:
| Q |
11 |
catcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagagattgtttccaacaattcttcaacttaca |
110 |
Q |
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| T |
30238828 |
catcatcaaagttgagacaatagctttgaagatcatagctatactgtggactgctccttttccacccaagagattgtttccaacaattcttcaacttaca |
30238729 |
T |
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| Q |
111 |
aaatagnnnnnnnacaatacatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattaccaagtgtcactgaagaggtaactcttgtt |
210 |
Q |
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| T |
30238728 |
aaatagtttttttacaataaatgacaaagagcaacactcaagtgtaacgcttctttgaacattattattaccaagtgtcactgaagaggtaactcttgtt |
30238629 |
T |
|
| Q |
211 |
ttcctttgaaacttcatcaattgatttctttgaaggctatacatcctagagagtttcattgtattactcaaacaaatgaaaaaacatcatgaaaggtgag |
310 |
Q |
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| T |
30238628 |
ttcctttgaaacttcatcaattgatttctttgaaagctatacatccttgagagtttcattgtattactcaaacaaatgaaaaaacatcatgaaaggtgag |
30238529 |
T |
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| Q |
311 |
tgttttcaagtgtcaccaacacaatgaagcacctagtacttaatgccactttctgatttatggttgataaaaataaaaacaatattatcatgaatagttt |
410 |
Q |
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| T |
30238528 |
ttttttcaagtgtcaccaacacaatgaagcacctagtacttaatgccactttctgatttatggttgataaaaataaaaacaatattatcatgaatagttt |
30238429 |
T |
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| Q |
411 |
atcatagtttacttttgctaccttctgctcaataatg |
447 |
Q |
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| T |
30238428 |
atcatagtttacttttgctaccttctgctcaataatg |
30238392 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39325312 - 39325356
Alignment:
| Q |
19 |
aagttgagacaatagctttgaagatcatagctatactgtggactg |
63 |
Q |
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| T |
39325312 |
aagttcagacaataactgcgaagatcatagctatactgtggactg |
39325356 |
T |
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