View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_10 (Length: 354)
Name: NF18865_low_10
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 33525002 - 33524679
Alignment:
| Q |
17 |
tagtttagaagcaaatgttgcttatgacgatggaaccttaggctggaaatttgaatgacatttaactccaaaaacgaaatggtcgagtatattacaagaa |
116 |
Q |
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| T |
33525002 |
tagtttagaagcaaatgttgcttataacgatggaaccttaggctgaaaatttgaatgacatttaactccaaaaacgaaattgtcgagtatattacaagaa |
33524903 |
T |
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| Q |
117 |
ctatgttggatgtatgggttttgggttactaagattaaaatttgtacaaaaaatggaaatgatagaaaaatatatactttactcgtacatatagtcatga |
216 |
Q |
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| T |
33524902 |
ctatgttggatgtatgggttttgggttactaaaattaaaatttgtacaaaaaatggaaatgatagaaaaatatatactttactcgtacatatagtcatga |
33524803 |
T |
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| Q |
217 |
atgtatgtaagcaattaaa-aaaatatcgaagtaaaatccaat-nnnnnnnnnttcaatataagactagattgaatgtgtgaatttgtttaagatggagc |
314 |
Q |
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| T |
33524802 |
atgtatgtaagcaattaaaaaaaatatcaaagtaaaatcctatcaaaaaaaaaatcaatataagactagattgaatgtgtgaatttgtttaagatggaac |
33524703 |
T |
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| Q |
315 |
cattacaatttcaagatttattct |
338 |
Q |
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| T |
33524702 |
cattacaatttcaagatttattct |
33524679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 33526424 - 33526349
Alignment:
| Q |
69 |
gaatgacatttaactccaaaaacgaaatggtcgagtatattacaagaactatgttggatgtatgggttttgggttact |
146 |
Q |
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|||||| ||||||||| ||||| ||||| |||| |||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
33526424 |
gaatgatatttaactctaaaaatgaaattatcga--atatcacaagaactatgttgaatgtatgtgttttgggttact |
33526349 |
T |
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