View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18865_low_11 (Length: 326)

Name: NF18865_low_11
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18865_low_11
NF18865_low_11
[»] chr2 (6 HSPs)
chr2 (15-309)||(32690436-32690730)
chr2 (18-310)||(26022175-26022467)
chr2 (19-310)||(27942284-27942566)
chr2 (202-282)||(11002106-11002186)
chr2 (42-91)||(11001946-11001995)
chr2 (208-273)||(19177171-19177236)
[»] chr5 (2 HSPs)
chr5 (18-310)||(20427968-20428260)
chr5 (95-310)||(34305068-34305274)
[»] chr4 (2 HSPs)
chr4 (39-310)||(5320864-5321135)
chr4 (208-250)||(20370202-20370244)
[»] chr1 (4 HSPs)
chr1 (15-252)||(45836381-45836618)
chr1 (208-245)||(17541227-17541264)
chr1 (208-276)||(27895219-27895288)
chr1 (208-245)||(37716659-37716696)
[»] scaffold0025 (1 HSPs)
scaffold0025 (184-308)||(73599-73723)
[»] chr6 (3 HSPs)
chr6 (235-308)||(21104379-21104452)
chr6 (38-91)||(20565297-20565350)
chr6 (208-272)||(1830350-1830414)
[»] chr8 (2 HSPs)
chr8 (193-269)||(15011897-15011973)
chr8 (40-109)||(44276693-44276762)
[»] chr7 (1 HSPs)
chr7 (208-245)||(26650300-26650337)
[»] chr3 (1 HSPs)
chr3 (38-130)||(32648846-32648938)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 32690436 - 32690730
Alignment:
Q  15 tgtgtgggaggatgcggctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtc 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32690436 tgtgtgggaggatgcgtctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtc 32690535  T
Q  115 tctcttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||    
T  32690536 tctcttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcggggttaccacgttcgtcttattcttttcttcagctaatatg 32690635  T
Q  215 gatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaac 309  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32690636 gatggcttgtgtctgagttatttggaaggaacggaatagtagggtttttcatcagaagattacagattatcagaccttagccgacaaggttaaac 32690730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 26022467 - 26022175
Alignment:
Q  18 gtgggaggatgcggctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtctct 117  Q
    |||||||| ||||| || | |||||| || |||||||||||||||||||||||||||||||| |||||||||| |  |||||||||   ||| |||||||    
T  26022467 gtgggagggtgcggttctcaggagactgcagatcaccttctctttcgttgcgacacttttagtagcgtgtggttcatggtgttgcatcagcttcgtctct 26022368  T
Q  118 cttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctggat 217  Q
    ||| ||||||||||||| | || ||||||||||||| ||| ||||| ||| |||| ||| ||||| ||||||||||||| || |||||||||||||||||    
T  26022367 cttatgttgctcctggtggttgccgggatcatttcagtcattttggtcatatggcgggggtaccacgttcgtcttattcgttccttcagctaatctggat 26022268  T
Q  218 ggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaact 310  Q
    || ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  26022267 ggattgtgtctgggttatttggaaggaacaaaatagcagagtttttcatcagaagattacagattcttagaccttagctgacaaggttaaact 26022175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 27942566 - 27942284
Alignment:
Q  19 tgggaggatgcggctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtctctc 118  Q
    ||||||| ||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27942566 tgggagggtgcggttcacaaaagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggttcgcggtgttgcagtggttacgtctctc 27942467  T
Q  119 ttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctggatg 218  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||      ||   ||| ||||| ||||||||||||| || |||||  |||||||||||    
T  27942466 ttttgttgctcctggtggctgccgggatcatttcactcattttg------tg---gggctaccacgttcgtcttattcgttccttcaattaatctggatg 27942376  T
Q  219 gcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaact 310  Q
    ||||||| | |||||||||||||||||||||| | ||  ||||||||||| ||||||||| |||  || ||||||   ||||||||||||||    
T  27942375 gcttgtgaccgggttatttggaaggaacggaacaacatagtttttcatcataagattacaaattcccacaccttaactgacaaggttaaact 27942284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 11002106 - 11002186
Alignment:
Q  202 ttcagctaatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagatt 282  Q
    ||||| |||||||||| |||| |||||||||||| ||||||||| |||| |  |||||||||||||||||| || ||||||    
T  11002106 ttcagataatctggatcgcttatgtctgggttatctggaaggaaaggaacaatagggtttttcatcagaaggttgcagatt 11002186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 11001946 - 11001995
Alignment:
Q  42 accgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtc 91  Q
    |||||||||||||| |||||| |||||| | ||||||||| |||||||||    
T  11001946 accgcggatcacctcctctttagttgcgtcccttttagcaacgtgtggtc 11001995  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 19177171 - 19177236
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaaga 273  Q
    ||||||||||||||  ||||||| |||||||||||||| | |||| |||| ||||| | |||||||    
T  19177171 taatctggatggctcttgtctggattatttggaaggaaagaaataacaggctttttaaccagaaga 19177236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 20427968 - 20428260
Alignment:
Q  18 gtgggaggatgcggctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtctct 117  Q
    ||||| || ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||    
T  20427968 gtgggtgggtgcggttcacaagagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggttcacggtgttgcagtggtttcgtctct 20428067  T
Q  118 cttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctggat 217  Q
    |||||||||||| || | |||| ||||||||||||||||| ||||| ||| | || ||| ||| | ||||||||||||| ||  ||||||||||||||||    
T  20428068 cttttgttgctcttgatggctgccgggatcatttcactcattttggtcatatagcggggctacgacgttcgtcttattcgttcattcagctaatctggat 20428167  T
Q  218 ggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaact 310  Q
    ||||||||| |||||||||||||||||||| || | ||| ||||||||||||||||||||| ||| ||| |||||||  ||||| ||||||||    
T  20428168 ggcttgtgtttgggttatttggaaggaacgaaacaacagagtttttcatcagaagattacaaattctcaaaccttagctgacaaagttaaact 20428260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 310
Target Start/End: Complemental strand, 34305274 - 34305068
Alignment:
Q  95 ggtgttgcagtggctacgtctctcttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttat 194  Q
    ||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||| |||         | |||| ||||||||| |||||||| ||    
T  34305274 ggtgttgcagtggcttcatctctcttttgttgctcctggtggctgccgggatcatttcagtca---------tatggcggggttaccacgttcgtctcat 34305184  T
Q  195 tcttttcttcagctaatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttag 294  Q
    || ||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  34305183 tcgttcattcagctaatctagatgacttgtgtctgggttatttggaaggaacggaatagcagtgtttttcatcagaagattacagattctcagaccttag 34305084  T
Q  295 tcgacaaggttaaact 310  Q
      ||||||||||||||    
T  34305083 ctgacaaggttaaact 34305068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 5320864 - 5321135
Alignment:
Q  39 gagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtctctcttttgttgctcctggtagct 138  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||| || | |||    
T  5320864 gagaccgcagatcaccttctctttcgttgcgacacttttagcagcgtgtggttcacggtgttgcagtggtttcgtctctcttttgttgctcttgatggct 5320963  T
Q  139 gtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctggatggcttgtgtctgggttatttg 238  Q
    | ||||||||||||||||| ||||| ||| | || ||| ||| | ||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||    
T  5320964 gccgggatcatttcactcattttggtcatatagcggggctacgacgttcgtcttattcgttcattcagctaatctggatggcttgtgtttgggttatttg 5321063  T
Q  239 gaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaact 310  Q
    ||||||||| || | ||| ||||||||||||||||||||| ||| ||| |||||||  ||||| ||||||||    
T  5321064 gaaggaacgaaacaacagagtttttcatcagaagattacaaattctcaaaccttagctgacaaagttaaact 5321135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 20370244 - 20370202
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaacggaa 250  Q
    |||||||| | ||||||||||||||||||||||||||| ||||    
T  20370244 taatctggcttgcttgtgtctgggttatttggaaggaaaggaa 20370202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 45836618 - 45836381
Alignment:
Q  15 tgtgtgggaggatgcggctcacgggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtc 114  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||| | |||||| || ||||||||| |||||| |||    
T  45836618 tgtgtgggagggtgcggctcattggagaccgcggatcaccttctctttcgttgcgacccctttagcatcatgtggttcgtggtgttgcattggctaggtc 45836519  T
Q  115 tctcttttgttgctcctggtagctgtcgggatcatttcactcactttggccatctggcagggttaccatgttcgtcttattcttttcttcagctaatctg 214  Q
    |||| ||||||||| ||||| | ||||   ||||||||| ||| |||| |||| |||||||||||||  ||||||||||| | || ||||||||||||||    
T  45836518 tctcctttgttgcttctggtgggtgtcacaatcatttcattcagtttgaccatttggcagggttaccgcgttcgtcttatccgttccttcagctaatctg 45836419  T
Q  215 gatggcttgtgtctgggttatttggaaggaacggaata 252  Q
    |||||| ||||| | ||| |||||||||||||||||||    
T  45836418 gatggcatgtgttttggtcatttggaaggaacggaata 45836381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 17541227 - 17541264
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaa 245  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  17541227 taatctggatggctagtgtatgggttatttggaaggaa 17541264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 27895219 - 27895288
Alignment:
Q  208 taatctggatggcttgtgtctggg-ttatttggaaggaacggaatagcagggtttttcatcagaagatta 276  Q
    ||||||||||||||  ||| |||| |||||||||||||| | || |||||| ||||| ||||||||||||    
T  27895219 taatctggatggctattgtttggggttatttggaaggaaagaaacagcaggatttttaatcagaagatta 27895288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 37716659 - 37716696
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaa 245  Q
    |||||||||||||| | |||||||||||||||||||||    
T  37716659 taatctggatggctagagtctgggttatttggaaggaa 37716696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 73723 - 73599
Alignment:
Q  184 gttcgtcttattcttttcttcagctaatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaagattacagatta 283  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | ||   |||||||||||||||||||||| |     
T  73723 gttcgtcttattcgtttcttcagctaatctggatagcttgtgtctgggtcattcggaaggaacggaacaacaaattttttcatcagaagattacagactc 73624  T
Q  284 tcagaccttagtcgacaaggttaaa 308  Q
    ||| ||||||| ||||||| |||||    
T  73623 tcacaccttagccgacaagtttaaa 73599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 21104452 - 21104379
Alignment:
Q  235 tttggaaggaacggaatagcagggtttttcatcagaagattacagattatcagaccttagtcgacaaggttaaa 308  Q
    ||||||||||||  || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21104452 tttggaaggaacaaaaaagcaaggtttttcatcagaagattacagattatcagaccttagccgacaaggttaaa 21104379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 20565350 - 20565297
Alignment:
Q  38 ggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtc 91  Q
    ||||||||||||||||||||| ||  ||||||| |||||| |||||||||||||    
T  20565350 ggagaccgcggatcaccttctattcagttgcgatacttttggcagcgtgtggtc 20565297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 1830350 - 1830414
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcagaag 272  Q
    |||||||| |||||||||||||  ||||||  |||||| |||| | || ||||||||||||||||    
T  1830350 taatctggctggcttgtgtctgaattatttaaaaggaaaggaacaacaaggtttttcatcagaag 1830414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 15011973 - 15011897
Alignment:
Q  193 attcttttcttcagctaatctggatggcttgtgtctgggttatttggaaggaacggaatagcagggtttttcatcag 269  Q
    ||||||| |||| | |||||||| |||||| ||||| |||||||| ||||||| |||||| | | ||||||||||||    
T  15011973 attctttccttcggataatctggttggcttatgtctaggttatttagaaggaaaggaataaccgagtttttcatcag 15011897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 44276762 - 44276693
Alignment:
Q  40 agaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggct 109  Q
    |||||||||| ||||| || ||  | |||||||||||| | |||||||||| |||||| |||||||||||    
T  44276762 agaccgcggaccacctcctattcagctgcgacacttttggaagcgtgtggttcgcggttttgcagtggct 44276693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 26650337 - 26650300
Alignment:
Q  208 taatctggatggcttgtgtctgggttatttggaaggaa 245  Q
    |||||||| | |||||||||||||||||||||||||||    
T  26650337 taatctggcttgcttgtgtctgggttatttggaaggaa 26650300  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 32648846 - 32648938
Alignment:
Q  38 ggagaccgcggatcaccttctctttcgttgcgacacttttagcagcgtgtggtccgcggtgttgcagtggctacgtctctcttttgttgctcc 130  Q
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T  32648846 ggagactgtggatcacctcctcttcagctgcgacactttaggcagcgtgtggtccgtggttttgtagtggcttcgtttaacttttgtcgctcc 32648938  T

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