View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_16 (Length: 289)
Name: NF18865_low_16
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 531707 - 531438
Alignment:
| Q |
6 |
acttcaatttcatatgttgttccgttcacacgattcactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtattaaaaggcg |
105 |
Q |
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| T |
531707 |
acttcaatttcatatgttgttccgttcacacgatttactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtattaaaaggcg |
531608 |
T |
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| Q |
106 |
gcaacaacattgttacatgtactaaattcaagtattttaatgttctgttcacttgaaattgaagctccaatttctcaccatactttaattccatttgagt |
205 |
Q |
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| T |
531607 |
gcaacaacattgtgacatgtactaaattcaagtattttaatgttctgttcacttgaaattgaagctccaatttctgaccatactttaattccatttgagt |
531508 |
T |
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| Q |
206 |
cttagaatcaagagacataattttcggacgataatttgataaacgatcgcttagatacaaaggtgaatat |
275 |
Q |
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| T |
531507 |
cttagaatcaagagacataattttcggacgataatttgataaacgatcgcttagatacgaaggtgaatat |
531438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 7571527 - 7571439
Alignment:
| Q |
15 |
tcatatgttgttccgttcacacgattcactttattttgctccaacaccaacaacctttgattcattgagaatgaatgtgtattaaaagg |
103 |
Q |
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| T |
7571527 |
tcatacgttgttccctccacaatattcactttgtttgactccaacaccaacaacctctgattcatggagaatgagtgtgtgttaaaagg |
7571439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 52914623 - 52914580
Alignment:
| Q |
59 |
caccaacaacctttgattcattgagaatgaatgtgtattaaaag |
102 |
Q |
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| T |
52914623 |
caccaacaacctttgattcattgagaaagaatgcgtgttaaaag |
52914580 |
T |
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