View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18865_low_17 (Length: 274)
Name: NF18865_low_17
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_17 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 12699872 - 12700107
Alignment:
| Q |
39 |
tgtgcaaattatgttataggttgactttggataagtattttattcaattatacaatgatgtttctaggaagaatcctatgattcttgttgagatttcaga |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699872 |
tgtgcaaattatggtataggttgactttggataagtattttattcaattatacaatgatgtttctaggaagaatcctatgattcttgttgagatttcaga |
12699971 |
T |
|
| Q |
139 |
ttcattgttagaatccaaatctagtttgatttgtgttgataatttaaggggtgttttcgaattttcgctgaattttttgaatgatagagttaaggttcgt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12699972 |
ttcattgttagaatccaaatctagtttgatttgtgttgataatttaaggggtgttttcgaattttcgctgaattttttgaatgatagagttaaggttcgc |
12700071 |
T |
|
| Q |
239 |
gcgtcttgtaatggattgttgtgttgttctagtatt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12700072 |
gcgtcttgtaatggattgttgtgttgttctagtatt |
12700107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University