View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_18 (Length: 260)
Name: NF18865_low_18
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 37305610 - 37305413
Alignment:
| Q |
45 |
catgaatacatcagccagcatcaaatgcttgtgataatatttacatatcacataatagggtcttaaataaactatgaaagtaatagggtcaaacaagata |
144 |
Q |
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| T |
37305610 |
catgaatacatcagccagcatcaaatgcttgtgataatatttacatatcacataatagggtcttaaataaactatgaaagtaatagggtcaaacaagata |
37305511 |
T |
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| Q |
145 |
ttttaaatagataccattcattatttgctaaagcatcaagaagagttgacttcccactaccagaaagacccattatagctaagaattgtcctggtttt |
242 |
Q |
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| T |
37305510 |
ttttaaatagataccattcattatttgctaaagcatcaagaagagttgacttcccactaccagaaagacccattatagctaagaattgtcctggtttt |
37305413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 37305678 - 37305647
Alignment:
| Q |
15 |
aatatattttaaggtgatattattaggtgaca |
46 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37305678 |
aatatattttaaggtgatattattaggtgaca |
37305647 |
T |
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