View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_2 (Length: 579)
Name: NF18865_low_2
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 569
Target Start/End: Complemental strand, 38625421 - 38624882
Alignment:
| Q |
19 |
cacttgactgggcaacaannnnnnnagctagttgccaaatttgtgtctccatattcttcatagatgtttcattatgtctttgaacaacttcatgatttgc |
118 |
Q |
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| T |
38625421 |
cacttgactgggcaacaatttttttagctagttgccaaatttgtgtctccatattcttcatagatgtttcattatgtctttgaacaacttcatgatttgc |
38625322 |
T |
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| Q |
119 |
tttgatttcttggaagttattctgggtgaccttgaaaaaactagtcaatgattcttcaagtgttgaaagtttcttttgttgttgaggttgaggaggggga |
218 |
Q |
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| T |
38625321 |
tttgatttcttggaagttattctgggtgaccttgaaaaaactagtcaatgattcttcaagtgttgaaggtttcttttgttgttgaggttgaggaggggga |
38625222 |
T |
|
| Q |
219 |
ataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccacacatgattgtaggtgttgaagtaaacgttcactttttggtaat |
318 |
Q |
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| T |
38625221 |
ataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccacacatgatcgtaggtgttgaagtaaacgttcactttttggtaat |
38625122 |
T |
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| Q |
319 |
tcccaatataattcacttcttcacttcttcacttgctcccttgggtacacctcaccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtg |
418 |
Q |
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| T |
38625121 |
tcccaatataattcacttcttc--------acttgctcccttgggtacacctcaccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtg |
38625030 |
T |
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| Q |
419 |
cttgttgaacctgttgaacttgcgcttgttgggcttgaacttgtcccatactcatggctattacttgtttggtatgtgctctaatttgttactcattaag |
518 |
Q |
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| T |
38625029 |
cttgttgaacctgttgaacttgcgcttgctgggcttgtatttgtcccatactcatggcttttacttgtttggtatgtgctctaatttgttactcattaag |
38624930 |
T |
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| Q |
519 |
gtttgattggccagcatatcactattctcattcaccctaaacactcctttg |
569 |
Q |
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| T |
38624929 |
gtttgattgaccaacatatcac---tctcattcaccctaaacactcctttg |
38624882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 28250562 - 28250493
Alignment:
| Q |
206 |
ttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccac |
275 |
Q |
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| T |
28250562 |
ttgaggagagggaataagtgtattcaaggtgttgttgtttaagtatttgaggataggatgttgtgcccac |
28250493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 440
Target Start/End: Original strand, 21021502 - 21021589
Alignment:
| Q |
354 |
ctcccttgggtacac-ctcaccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtgcttgttgaacctgttgaacttg |
440 |
Q |
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| T |
21021502 |
ctccctcgggtacacactcaccattagcatgtccttcaccacaaaattcgcacctcaaaacttgtggttggtgaatctgttgaacttg |
21021589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 12815395 - 12815476
Alignment:
| Q |
191 |
cttttgttgttgaggttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcc |
272 |
Q |
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| T |
12815395 |
cttttgttgttgaggttgcggaggtggaatgagtgggtttaaggtgttgttatttgagtacttgaggttaggatgttgtgcc |
12815476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 477
Target Start/End: Original strand, 17843365 - 17843490
Alignment:
| Q |
354 |
ctcccttgggtacacct-caccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtgcttgttgaacctgttgaacttgcgcttgttgggc |
452 |
Q |
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| T |
17843365 |
ctccctcgggtacacattcaccattagcatgtccttcaccacaaaactcgcatctcaaaacttgtgtttgttgaatctgttgaacttaagtttgttgaac |
17843464 |
T |
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| Q |
453 |
ttgaac-ttgtcccatactcatggct |
477 |
Q |
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| T |
17843465 |
ttgaactttgtctcatacttatggct |
17843490 |
T |
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