View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_3 (Length: 514)
Name: NF18865_low_3
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Complemental strand, 40924645 - 40924143
Alignment:
| Q |
20 |
ttttatgttttctggtttgcaattctaccttgttgtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagtt |
119 |
Q |
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| T |
40924645 |
ttttatgttttctggtttgcaattctaccttgttgtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagtt |
40924546 |
T |
|
| Q |
120 |
ctgataattacttagtatttagtttaatcattgttattaaccggtttttaaacactgc--------------ggatctatgttagattttgagttgattg |
205 |
Q |
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| T |
40924545 |
ctgataattacttagtatttagtttaaccattgttattaactggttcttaaacactgcaaatatgtgactgcggatctatgttagattttgagttgattg |
40924446 |
T |
|
| Q |
206 |
acaaaaatttatattagcatgctcggtgttagttaacaag------------gatacatcgatactatatgggacaatcttcttctaactctttttcatt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924445 |
acaaaaatttatattagcatgctcggtgttagttaacaagtaatatttgagggatacatcgatactatatgggacaatcttcttctaactctttttcatt |
40924346 |
T |
|
| Q |
294 |
cagccttgaacattctcaatggcccctcagctctgccatcgtcattgcccattggtcaacgtaacctacaacaactgtgaaggatttgttagtttcttag |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924345 |
cagccttgaacattctcaatggcccctcagctctgccatggtcattg-------gtcaacgtaacctacaacaactgtgaaggatttgttagtttcttag |
40924253 |
T |
|
| Q |
394 |
atgaagattacaaagtatgataccaattctcattttccatactagattcacttcattcacaggcgtttgtgttttatgcttcacttgttttcatccattt |
493 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40924252 |
atgaagatcacaaagtatgataccaattctcattttccatactagattcgcttcattcactggcgtttgtgttttatgcttcacttgttttcatccattt |
40924153 |
T |
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| Q |
494 |
ctatcttcat |
503 |
Q |
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|||||||||| |
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| T |
40924152 |
ctatcttcat |
40924143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 34990727 - 34990691
Alignment:
| Q |
84 |
acttcagttaatatttctgttaattttgttgaagttc |
120 |
Q |
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| T |
34990727 |
acttcagttaatatttctgttaattttgttgaagttc |
34990691 |
T |
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