View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18865_low_7 (Length: 435)
Name: NF18865_low_7
Description: NF18865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18865_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 93 - 332
Target Start/End: Original strand, 3426240 - 3426479
Alignment:
| Q |
93 |
gcattgccaaatggatgagagttcaacaaacatactagatgttgtaccagaaaaaccataaatccaagtctcgttagagtttctcaagaggccagcaaaa |
192 |
Q |
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| T |
3426240 |
gcattaccaattggatgagagttcagcaaacatattagatgttgtaccagaaaaaccatgaatccaaatctcgttagagtttctcaagaagccagcaaaa |
3426339 |
T |
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| Q |
193 |
cccacattacttgggttgccaaaggaggaatcatccacattgactttgatataaccatcagtcggtgggtgtcaacgaacacgccgaagggcagtacggt |
292 |
Q |
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| T |
3426340 |
cccacattacttgggttgccaaaggaggaaccatccacattgactttgatataaccatcagttggtgggtgtcaacgaacgcgccgaaggacagtacggt |
3426439 |
T |
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| Q |
293 |
ccatattttgagcatttatcgtaaaagaatgatatgagaa |
332 |
Q |
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| T |
3426440 |
ccacattttgaccatttatcgtaaaagaatgatatgagaa |
3426479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 3426567 - 3426663
Alignment:
| Q |
325 |
tatgagaagtgaacctatcttaaccataacatgatgcttgaaccaaatctgacaactgctaatagagaaataggttggacaagaggaatgaaattaa |
421 |
Q |
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| T |
3426567 |
tatgaaaagtgaacctgtcttaaccataacatgatgcttgaaccaaatctgacaactgctaatagagaaataggttggacaagaggaatgaaattaa |
3426663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 138 - 260
Target Start/End: Complemental strand, 13027586 - 13027464
Alignment:
| Q |
138 |
accagaaaaaccataaatccaagtctcgttagagtttctcaagaggccagcaaaacccacattacttgggttgccaaaggaggaatcatccacattgact |
237 |
Q |
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| T |
13027586 |
accagaaaaaccatgaatccaaatcccattagagtctctcaagaggccactaaaacccgcattaccttggttgccaaagaaagaaccatccacgttaact |
13027487 |
T |
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| Q |
238 |
ttgatataaccatcagtcggtgg |
260 |
Q |
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| T |
13027486 |
ttgatataatcatcagtcggtgg |
13027464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 13097907 - 13097648
Alignment:
| Q |
10 |
acatcatctatcaaatccatagccgctttagagtcagatttcaaaataataaacatataaccaaggtcccatgctagctgaaggcattgccaaatggatg |
109 |
Q |
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| T |
13097907 |
acatcttcaatcaaatccataacatttttagagtcaaactcaaaaataataaatttatgaccaatgtccgttgccaactgaagacctacccaaatggttg |
13097808 |
T |
|
| Q |
110 |
agagttcaacaaacatactagatgttgtacca---------gaaaaaccataaatccaagtctcgttagagtttctcaagaggccagcaaaacccacatt |
200 |
Q |
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| T |
13097807 |
agagttcagcaaatatattagatgttgtaccacaagaaccagaaaaaccatgaatccaaatcccattagagtctctcaagagaccactaaaacccgcact |
13097708 |
T |
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| Q |
201 |
acttgggttgccaaaggaggaatcatccacattgactttgatataaccatcagtcggtgg |
260 |
Q |
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| T |
13097707 |
accttggttgccaaagaaagaaccatccacgttaactttgatataatcatcagtcggtgg |
13097648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 46493990 - 46493869
Alignment:
| Q |
152 |
aaatccaagtctcgttagagtttctcaagaggccagcaaaacccacattacttgggttgccaaaggaggaatcatccacattgactttgatataaccatc |
251 |
Q |
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|||||||| |||| ||||||| |||||||||| || ||||| ||||||||| ||||||| ||||||| || |||||||| ||||||||||||||||||| |
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| T |
46493990 |
aaatccaaatctcattagagtctctcaagaggtcaccaaaatccacattacatgggttgtcaaaggaataaccatccacactgactttgatataaccatc |
46493891 |
T |
|
| Q |
252 |
agtcggtgggtgtcaacgaaca |
273 |
Q |
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|| |||||||| |||| |||| |
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| T |
46493890 |
agagggtgggtgccaacaaaca |
46493869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 15587411 - 15587481
Alignment:
| Q |
325 |
tatgagaagtgaacctatcttaaccataacatgatgcttgaaccaaatctgacaactgctaatagagaaat |
395 |
Q |
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| T |
15587411 |
tatgaaaagtgaacttgtcttagtcatagcatgatgcttgaaccaaatctgacaattggtaatagagaaat |
15587481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 15587202 - 15587257
Alignment:
| Q |
218 |
aggaatcatccacattgactttgatataaccatcagtcggtgggtgtcaacgaaca |
273 |
Q |
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| T |
15587202 |
aggaaccatccatattgactttgatataaccatcagtcagttggtgctaacgaaca |
15587257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 39175205 - 39175317
Alignment:
| Q |
36 |
tttagagtcagatttcaaaataataaacatataaccaaggtcccatgctagctgaaggcattgccaaatggatgagagttcaacaaacatactagatgtt |
135 |
Q |
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|||||||||| ||| |||||||||| || | | ||||||||| |||| | ||||||| | ||||||||||||| ||| || |||||| | |||||||| |
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| T |
39175205 |
tttagagtcatattccaaaataatatacttgtgaccaaggtcatatgccaagtgaaggcctcgccaaatggatgatagtccagcaaacaaattagatgtt |
39175304 |
T |
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| Q |
136 |
gtaccagaaaaac |
148 |
Q |
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|||||| |||||| |
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| T |
39175305 |
gtaccacaaaaac |
39175317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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