View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_high_12 (Length: 238)
Name: NF18866_high_12
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2117041 - 2116818
Alignment:
| Q |
1 |
caactccccatgttagattccctgcacacatatatatggatgagagagaaaccctagaagtggagatttggatccactgtggtcattatcctacacattt |
100 |
Q |
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| T |
2117041 |
caactccccatgttagattccctgcacacatatatatggatgagagagaaaccctagaagtggagatttggatccactgtggtcattatcccacacattt |
2116942 |
T |
|
| Q |
101 |
ataaagttaatacatcagtggccgttgcatcgagatcaaatggtttagattttaaacttatattttatagtttaaaagaaaattaaaattgcttgtttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2116941 |
ataaagttaatacatcagtggccgttgcatcgagatcaaatggtttagattttaaacttatattttagagtttaaaagaaaattaaaattgcttgtttta |
2116842 |
T |
|
| Q |
201 |
taaactattcaatcttgattcaat |
224 |
Q |
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|||||| ||||||||||||||||| |
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| T |
2116841 |
taaactgttcaatcttgattcaat |
2116818 |
T |
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