View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18866_high_3 (Length: 460)
Name: NF18866_high_3
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 46550273 - 46549855
Alignment:
| Q |
17 |
agacagcttccaaagtatctattgagtgtattgtttgtttctttctgcttccttttcttacgttgtttttggttcttatttgtatgcatgcatgcatgca |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46550273 |
agacagcttccaa-gtatctattgagtgtattgtttgtttctttctgcttccgtttcttacgttgtttttggttcttatttgtatgcatgcatgcat--- |
46550178 |
T |
|
| Q |
117 |
tatccaatagaaaaatacgtgtcttgttttaataccctttatttatggctttatgattgcacaacgacgatggcagcttttgcagaatatatgaatgttt |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46550177 |
-atccaatagaaaaa-acgtgtcttgttttaatac----------tggctttatgattgcaccacgacgatggcagcttttgcagaatatatgaatgttt |
46550090 |
T |
|
| Q |
217 |
tt-attgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggnnnnnnnnatgattcgattcaaa |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46550089 |
tttattgtgaaagcttgctgacttggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggttttttttatgattcgattcaaa |
46549990 |
T |
|
| Q |
316 |
actacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatttgaggcatgaatattcaccaccctccatagcaaaatatttattac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46549989 |
actacgtcctgcttaactaaaagtcaaataccgagaacagcaattcatgcaaatatgaggcatgaatatttaccacccaccatagcaaaatatttattac |
46549890 |
T |
|
| Q |
416 |
ctacttgctgtaacacataaacttcatcccctatg |
450 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
46549889 |
ctacttgctgtaacacctaaacatcatcccttatg |
46549855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University