View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18866_high_5 (Length: 311)
Name: NF18866_high_5
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 42482742 - 42483030
Alignment:
| Q |
11 |
ttatacttatacttatactgtcagtttatgcaagtccacaaaatttagtccaaattcacatgctaagagggttagtagatgaggttaggagttttccttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42482742 |
ttatacttatacttatactgtcagtttatgcaagcccacaaaatttagtccaaattcacatgctaagagggttagtagatgaggttaggagttttccttc |
42482841 |
T |
|
| Q |
111 |
aaaaaagagcttaggagtttgaggcttgtatatgaaagttataaatataaagatttcaccaaaaaactctctacacttatttaacatttcaccaactata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42482842 |
aaaaaagagcttaggagtttgaggcttgtatatgaaagttattaatataaagatttcaccaaaaaactctctacacttatttaatatttcaccaactata |
42482941 |
T |
|
| Q |
211 |
aactaactacttgggacaattcacatcccatcttaatgttttgttctttttggtaattataagctaattttctatccggtgattgtgat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42482942 |
aactaactacttgggacaattcacatcccatcttaatgttttgttctttttggtaattataagctaattttctatgcggtgattgtgat |
42483030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University