View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_high_8 (Length: 280)
Name: NF18866_high_8
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 10326080 - 10326323
Alignment:
| Q |
18 |
ggcactgcatacagaacacttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgta |
117 |
Q |
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| T |
10326080 |
ggcactacatacagaacacttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgta |
10326179 |
T |
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| Q |
118 |
gtagtcacatcaaaaagattataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaata |
217 |
Q |
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| T |
10326180 |
gtagtcacatcaaaaagattataaattgagggaactttccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaata |
10326279 |
T |
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| Q |
218 |
ttgggttatccgttgacaaagaaagaccatctataggccacgga |
261 |
Q |
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| T |
10326280 |
ttgggttatccgttgacaaagacagaccatctgtaggccacgga |
10326323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 9632628 - 9632818
Alignment:
| Q |
29 |
cagaacacttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgtagtagtcacatc |
128 |
Q |
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| T |
9632628 |
cagaatacttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggatgaagtagtgtgttaaggataaattgtgcagtggacgcatc |
9632727 |
T |
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| Q |
129 |
aaaaagattataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaatatt |
219 |
Q |
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| T |
9632728 |
aaagagattataaattaagggagctttccaaaccttcaatttttaatcaataaagtcacataatttctcctgcaacagaggctcaaatatt |
9632818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 37839787 - 37839975
Alignment:
| Q |
33 |
acacttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgtagtagtcacatcaaaa |
132 |
Q |
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| T |
37839787 |
acacttaccactcttctaccttttccaaatcaatttatcttccgtaacaagaggctgaagcggtgtattaagagttaactgtgcagtgggaacatcaaat |
37839886 |
T |
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| Q |
133 |
agattataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaatattgg |
221 |
Q |
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| T |
37839887 |
agattataaattaagggagctttccaaagctttaaatcttgatcaataaattcccataatttcacctgcaacaaaggctcaaatattgg |
37839975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 50634357 - 50634221
Alignment:
| Q |
125 |
catcaaaaagattataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaatattgggtt |
224 |
Q |
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| T |
50634357 |
catcaaagagattataaattaagggagttttccaagccttcgatgattgatcagtgaaatcacataacttcacctgcaccaaaggcgcaaatattgggtt |
50634258 |
T |
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| Q |
225 |
atccgttgacaaagaaagaccatctataggccacgga |
261 |
Q |
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| T |
50634257 |
atccgttgacaataaaagaccacctttaagccacgga |
50634221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 9809737 - 9809899
Alignment:
| Q |
35 |
acttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgtagtagtcacatcaaaaag |
134 |
Q |
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| T |
9809737 |
acttaccactcttctcccctttccaaattaatttatcttccgtaacaagaggttgtagtggtgtgttaagaataagttgtgcagtgggcatatcaaatag |
9809836 |
T |
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| Q |
135 |
attataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcac |
197 |
Q |
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| T |
9809837 |
attataaattaagggagctttacaaaccttcaaatcatgatcaataaaatcacacaatttcac |
9809899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 3602241 - 3602425
Alignment:
| Q |
35 |
acttaccactcttctcccccttccaactcaatttatcttccatatcaagaggttggcgaagagtattaagaattagttgtgtagtagtcacatcaaaaag |
134 |
Q |
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| T |
3602241 |
acttaccactcttcttccctttccaaattaatttatcttctgtaataagaggttgtagcagtgtattaaggataagttctgcagtgggcgcatcaaatag |
3602340 |
T |
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| Q |
135 |
attataaattgagggaactatccaaaccttcaaagattaatcaataaaataacataacttcacttgcaacaaaagctcaaatatt |
219 |
Q |
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| T |
3602341 |
attataaattaagggagtttttcaaatctttgaatcttgatcaataaaatcacataatttcacctacaacaaaggctcaaatatt |
3602425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 29095071 - 29095142
Alignment:
| Q |
178 |
ataaaataacataacttcacttgcaacaaaagctcaaatattgggttatccgttgacaaagaaagaccatct |
249 |
Q |
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| T |
29095071 |
ataaaatcacataactttacctgcatcaaaagcgcaaatattgggttatccgtcgacaatggcagaccatct |
29095142 |
T |
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