View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_1 (Length: 721)
Name: NF18866_low_1
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Original strand, 40001689 - 40002374
Alignment:
| Q |
1 |
ctttttgttcttgaagaataataggcacagagagagatagaatgttggtttttgaagatttttaaaatggataattataggcacttgttgtgttaggtga |
100 |
Q |
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| T |
40001689 |
ctttttgttcttgaagaataataagcacagagagagatagaatgttggtttttgaagatttttaaa-tggataattataggcacttgttgggttaggtga |
40001787 |
T |
|
| Q |
101 |
gtttcgtttttattatttttatacaagtataaatttatatatgaatgtgttatatggtgacatgttttgtgtgctaaaaggacaatgaagcatattaatt |
200 |
Q |
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| T |
40001788 |
gtttcgattttattatttttatacaagtataaatttatatatgaatgtgttatatggtgacatgttttgtgtgctaaaaaaacaatgaagcatattaatt |
40001887 |
T |
|
| Q |
201 |
tagttaatatgagttttgactgggctagcagggcaaggcgcatgccaatgaaaccaatccgaatgctgttccaaggaagaagttgcccaagttagttatt |
300 |
Q |
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| T |
40001888 |
tagttaatatgagttttgactgggctagcagggcaatgcgcatgccaatgaaaccaatccgaatgctgttctaaggaagaagttgcccaagttagttatt |
40001987 |
T |
|
| Q |
301 |
tttaggacaatttgactttttatttggtctatctgtaaatgacatatttgtgatgtctacatgtaaacaactatgcttttaatttattcctaacctcatt |
400 |
Q |
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| T |
40001988 |
tttaggacaatttgactttttatttggtctatctgtaaatgacatatttgtgatgtctacatgtaaacaactatgcttttaatttattcctaacctcatt |
40002087 |
T |
|
| Q |
401 |
attcctcaaaaagacttttacccctaaaagttagtggttatgatctggattctagaagaaggtctttacatcaactaattaccgtggacgcaaagctgca |
500 |
Q |
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| T |
40002088 |
attcctcaaaaagacttttacccctgaaagttagtggttatgatctggattctagaagaaggtctttacatcaactaattaccgtgggcgcaaaactgca |
40002187 |
T |
|
| Q |
501 |
tctgaaacgtaattaacatgaatggataagtaaagtttttctcactgga--------tggtaaaaacacaaattaataatataggtgaagatgccaacat |
592 |
Q |
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| T |
40002188 |
tctgaaacgtaatcaacatgaatggataagtgaagtttttctcactcgatgatgaactgataaaaacacaaactaataatataggtgaagatgccaacat |
40002287 |
T |
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| Q |
593 |
aacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagttaatgtcactttttggttaagtggtaaaac |
679 |
Q |
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| T |
40002288 |
aacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagttaatgtcactttttggttaagtggtaaaac |
40002374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 710
Target Start/End: Original strand, 40003705 - 40003740
Alignment:
| Q |
675 |
aaaacaacaatccttagactcgaaagtcacaggttc |
710 |
Q |
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| T |
40003705 |
aaaacaacaatccttagactcgaaaatcacaggttc |
40003740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 43104966 - 43105016
Alignment:
| Q |
288 |
caagttagttatttttaggacaatttgactttttatttggtctatctgtaa |
338 |
Q |
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| T |
43104966 |
caagttagttatttttaggactatttgactttttatttggactatctgtaa |
43105016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 43104824 - 43104918
Alignment:
| Q |
152 |
atatggtgacatgttttgtgtgctaa-aaggacaatgaagcatattaatttagttaatatgagttttgactgggctagcagggcaaggcgcatgc |
245 |
Q |
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| T |
43104824 |
atatgatgacatgttttgtgtgccaagaagaacaatgtaacacattaatttagttaatataagtttcgactgagctagtagggcatggtgcatgc |
43104918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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