View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_10 (Length: 283)
Name: NF18866_low_10
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 37557201 - 37557473
Alignment:
| Q |
1 |
aaagagttaaagtagtatttttccgttagaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgttttaatttgtttc |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557201 |
aaagagttaaagtagtatttgtctgttagaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgttttaatttgtttc |
37557300 |
T |
|
| Q |
101 |
agttgccactcaccactagcctttattctagctaagtgggttgctttcagttgtgttttttatcgtgtgttgaatggctatttaagccaacattgcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557301 |
agttgccactcaccactagcctttattctagctaagtgggttgctttcagttgtgttttttatcgtgtgttgaatggctatttaagccaacattgcaatt |
37557400 |
T |
|
| Q |
201 |
aataaaattgagtcatttagtccaattgttgtgttctttgctatcagtttccaaacgcttaaacacaggttct |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557401 |
aataaaattgagtcatttagtccaattgttgtgttctttgctatcagtttccaaacgcttaaacacaggttct |
37557473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 37561539 - 37561811
Alignment:
| Q |
1 |
aaagagttaaagtagtatttttccgttagaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgttttaatttgtttc |
100 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561539 |
aaagagttaaagtagtatttgtctgttagaataaaatcctagtttataggataggacttggtctttaagaaattaatttgtatttgttttaatttgtttc |
37561638 |
T |
|
| Q |
101 |
agttgccactcaccactagcctttattctagctaagtgggttgctttcagttgtgttttttatcgtgtgttgaatggctatttaagccaacattgcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561639 |
agttgccactcaccactagcctttattctagctaagtgggttgctttcagttgtgttttttatcgtgtgttgaatggctatttaagccaacattgcaatt |
37561738 |
T |
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| Q |
201 |
aataaaattgagtcatttagtccaattgttgtgttctttgctatcagtttccaaacgcttaaacacaggttct |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37561739 |
aataaaattgagtcatttagtccaattgttgtgttctttactatcagtttccaaacgcttaaacacaggttct |
37561811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 21469976 - 21469724
Alignment:
| Q |
25 |
gttagaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgttttaatttgtttcagttgccactcaccactagccttt |
124 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||||||| ||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
21469976 |
gttagaataaaattctagtttataggagaagacttagtctttatgaatttaatttttatttgttttaatttgtttcagttactactcaccactagccttt |
21469877 |
T |
|
| Q |
125 |
att---ctagctaagtgggttgctttcagttgtgttttttatcgtgtgttgaatggctatttaagccaacattgcaattaat-aaaattgagtcatttag |
220 |
Q |
| |
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||| |||||||||||||||||||| ||||| |||| ||| |||||| || |||||||||||||||||||||||| ||| |||| ||||||||| || |
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| T |
21469876 |
attttagtagctaagtgggttgctttcggttgttgttttcatcatgtgttaaaaggctatttaagccaacattgcaatcaataaaaactgagtcattcag |
21469777 |
T |
|
| Q |
221 |
tccaattgttgtgttctttgctatcagtttccaaacgcttaaacacaggttct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
21469776 |
tccaattgttgtgttctttgctatcagtttccaaacacttaaatacaggttct |
21469724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 30741824 - 30741593
Alignment:
| Q |
29 |
gaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgtttt-aatttgtttca-gttgccactcaccactagcctttat |
126 |
Q |
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|||||| |||||||||||||||| | || |||||||||| |||||||||||||||||||||| |||||||||| ||| | ||||||||||||| ||||| |
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| T |
30741824 |
gaataacatcctagtttataggaaaagatttggtctttaggaaattaatttgtatttgtttttaatttgtttcctgttactactcaccactagcttttat |
30741725 |
T |
|
| Q |
127 |
tctagctaagtgggttgctttcagttgt-gttttttatcgtgtgttgaatggctatttaagccaacattgcaattaat-aaaattgagtcatttagtcca |
224 |
Q |
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| ||||||| |||||||| ||| ||| | |||||| |||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| |||||||| | |
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| T |
30741724 |
tttagctaactgggttgcattctgttattgtttttcatcgtgtgttgaatggttatttaagccaacgttgcaattaataaaaactgagtaatttagtcta |
30741625 |
T |
|
| Q |
225 |
attgttgtgttctttgctatcagtttccaaac |
256 |
Q |
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|||||||||||||||||| | ||||||||||| |
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| T |
30741624 |
attgttgtgttctttgctttgagtttccaaac |
30741593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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