View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_13 (Length: 250)
Name: NF18866_low_13
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 10325728 - 10325970
Alignment:
| Q |
9 |
gaagaatattactgcaaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcacacattg |
107 |
Q |
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| T |
10325728 |
gaagaaaattactgcaaaagagtgaaaaaaagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaatttacatcacgcattt |
10325827 |
T |
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| Q |
108 |
cttgaacaactttaggacattctaaaggacatgaatannnnnnncataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgcta |
207 |
Q |
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| T |
10325828 |
cttgaacaactttaggacattctaaaggacatgaatatttttttcataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgcta |
10325927 |
T |
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| Q |
208 |
attaggtgagcaagtgatggaaaacaataatgacacacgcgcc |
250 |
Q |
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| T |
10325928 |
attaggtgagcaagtgatggaaaacaataatgacacacgcgcc |
10325970 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 37837075 - 37837157
Alignment:
| Q |
20 |
ctgcaaaagagtgaaaaa-agtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
101 |
Q |
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| T |
37837075 |
ctgcaaaagagtgaaaatgagtgcatttatattataatcttgacgaaaaaccctatttattttgtcacataaaatcacatcac |
37837157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 9632276 - 9632369
Alignment:
| Q |
9 |
gaagaatattactgcaaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
101 |
Q |
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| T |
9632276 |
gaagaaaattgctgcaaaagagagaaaataagtgcatgtatattataatcttgacgaagcacgctaccgattttgtcccataaatccacatcac |
9632369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 2113814 - 2113722
Alignment:
| Q |
10 |
aagaatattactgcaaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
101 |
Q |
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| T |
2113814 |
aagaaaattgctgcaaaagagtgaaaataagtgcatgtatattataatcttgacgaagcaccccatcgattgtgtctcataaatacacatcac |
2113722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 39285892 - 39285773
Alignment:
| Q |
11 |
agaatattactgcaaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatca-cacattgc |
108 |
Q |
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| T |
39285892 |
agaaaattgctgcaaaatagtgaaaataagtgcatttccattataatcttgacgcaacaccttatttattttgtcccataaattcacatcatgtcatt-c |
39285794 |
T |
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| Q |
109 |
ttgaacaactttaggacattc |
129 |
Q |
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| T |
39285793 |
tttaacaactttaggacattc |
39285773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 3601886 - 3601967
Alignment:
| Q |
21 |
tgcaaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
101 |
Q |
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| T |
3601886 |
tgcaaaagaatgaaaataagtgcatgtatattataatcttgacgaaacaccctattaagattgtcccataaattcacatcac |
3601967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 29094651 - 29094822
Alignment:
| Q |
38 |
agtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcacacattgcttgaacaactttaggacattcta-aagga |
136 |
Q |
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| T |
29094651 |
agtgcatatatgttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaa |
29094750 |
T |
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| Q |
137 |
catgaatannnnnnncataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgctaa |
208 |
Q |
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| T |
29094751 |
cgtgaatattgtcttcataattgctattacaaagtacacaatcaagtgggcaagatacatctttgctactaa |
29094822 |
T |
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