View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18866_low_16 (Length: 236)
Name: NF18866_low_16
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_16 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 23351 - 23507
Alignment:
| Q |
66 |
gtttcaaaatatgtttacgttttggcnnnnnnn-tatcaatatatcacatcatacaattggtttcaaatatatgtagtagatgatttgactcaagacata |
164 |
Q |
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| T |
23351 |
gtttcaaaatatgtttatgttttggcagaaaaaatatcaatatatcatatcatacaattggtttcaaatatatgtagtagatgatttgacacaagacata |
23450 |
T |
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| Q |
165 |
ttcatcggatgtgagtgtaaaattatatatgaaattagttttgttagtcatatggtt |
221 |
Q |
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| T |
23451 |
ttcatcggatgtgagtgtaaaattatacatgaaattagttttgttagtcatatggtt |
23507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 23103 - 23176
Alignment:
| Q |
1 |
tttcaaaatagttttgcattgtcatccaatacaaaaatatcaatctattcatcatcatacaacaggtttcaaaa |
74 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23103 |
tttcaaaatagttttgcattgtcgtccaatagaaaaatatcaatctattcatcatcatacaacaggtttcaaaa |
23176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 1277740 - 1277584
Alignment:
| Q |
66 |
gtttcaaaatatgtttacgttttggcnnnnnnn-tatcaatatatcacatcatacaattggtttcaaatatatgtagtagatgatttgactcaagacata |
164 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1277740 |
gtttcaaaatatgtttatgttttggcagaaaaaatatcaatatatcatatcatacaattggtttcaaatatatgtagtagatgatttgacacaagacata |
1277641 |
T |
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| Q |
165 |
ttcatcggatgtgagtgtaaaattatatatgaaattagttttgttagtcatatggtt |
221 |
Q |
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| T |
1277640 |
ttcatcggatgtgagtgtaaaattatacatgaaattagttttgttagtcatatggtt |
1277584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1277988 - 1277915
Alignment:
| Q |
1 |
tttcaaaatagttttgcattgtcatccaatacaaaaatatcaatctattcatcatcatacaacaggtttcaaaa |
74 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1277988 |
tttcaaaatagttttgcattgtcgtccaatagaaaaatatcaatctattcatcatcatacaacaggtttcaaaa |
1277915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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