View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18866_low_17 (Length: 229)
Name: NF18866_low_17
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18866_low_17 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 25633172 - 25632968
Alignment:
| Q |
28 |
ttattaccaggcgcgattggagagtagcgttccacttccggccaagtacttcatttcagagcgaacttttcatcattcgttcgccatgaaattcctcaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25633172 |
ttattaccaggcgcgattggagagtagcgttccacttccagccaagtacttcatttcagagggaacttttcatcattcgttcgccatgaaattcctcaaa |
25633073 |
T |
|
| Q |
128 |
accttcaactccaaatccatttaccgccattctaaaatcctcccaaattcctcgctttacactac---tacttccgcacccccaccaccaccaatcaccg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
25633072 |
accttcaactccaaatccatttaccgccattccaaaacactctcaaattcctcgctttacactactactacttccgcacccccatcaccaccaatcaccg |
25632973 |
T |
|
| Q |
225 |
aaacc |
229 |
Q |
| |
|
||||| |
|
|
| T |
25632972 |
aaacc |
25632968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University