View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18866_low_2 (Length: 464)

Name: NF18866_low_2
Description: NF18866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18866_low_2
NF18866_low_2
[»] chr6 (22 HSPs)
chr6 (18-321)||(1775121-1775424)
chr6 (369-437)||(631532-631600)
chr6 (369-437)||(8660573-8660641)
chr6 (369-437)||(34838595-34838663)
chr6 (374-437)||(8669909-8669972)
chr6 (369-436)||(12501846-12501913)
chr6 (373-436)||(12512931-12512994)
chr6 (382-436)||(10883899-10883953)
chr6 (382-436)||(30446271-30446325)
chr6 (386-435)||(26654327-26654376)
chr6 (386-435)||(26760297-26760346)
chr6 (369-437)||(34328295-34328363)
chr6 (370-437)||(8218960-8219027)
chr6 (373-437)||(24933271-24933337)
chr6 (369-436)||(197818-197885)
chr6 (385-437)||(2503257-2503307)
chr6 (369-437)||(17961253-17961321)
chr6 (369-437)||(24348447-24348515)
chr6 (369-435)||(32359760-32359826)
chr6 (369-437)||(6380478-6380546)
chr6 (369-426)||(29428519-29428575)
chr6 (382-426)||(6725626-6725669)
[»] chr4 (40 HSPs)
chr4 (324-437)||(45081401-45081521)
chr4 (324-435)||(13094381-13094499)
chr4 (324-435)||(35809126-35809244)
chr4 (382-436)||(48403890-48403944)
chr4 (325-435)||(4981473-4981590)
chr4 (383-437)||(52017373-52017427)
chr4 (374-435)||(34464014-34464075)
chr4 (369-437)||(2215271-2215339)
chr4 (369-437)||(3533296-3533364)
chr4 (369-437)||(6290615-6290683)
chr4 (369-437)||(8991798-8991866)
chr4 (369-437)||(33604672-33604740)
chr4 (369-437)||(38173570-38173638)
chr4 (369-437)||(40721050-40721118)
chr4 (369-437)||(46917500-46917568)
chr4 (373-437)||(48506595-48506659)
chr4 (369-436)||(34199259-34199326)
chr4 (383-436)||(23540416-23540469)
chr4 (369-437)||(3618442-3618510)
chr4 (369-437)||(23389918-23389986)
chr4 (369-437)||(55560468-55560536)
chr4 (369-435)||(19272798-19272864)
chr4 (369-434)||(31336346-31336411)
chr4 (369-437)||(13110576-13110644)
chr4 (369-437)||(16020862-16020930)
chr4 (369-437)||(28899347-28899415)
chr4 (373-435)||(16175006-16175068)
chr4 (369-435)||(27863730-27863796)
chr4 (385-437)||(27142319-27142369)
chr4 (374-437)||(17329901-17329965)
chr4 (369-436)||(33523285-33523353)
chr4 (373-436)||(53348050-53348114)
chr4 (382-437)||(33077863-33077917)
chr4 (369-436)||(56054032-56054098)
chr4 (369-437)||(18469356-18469425)
chr4 (369-437)||(53184085-53184153)
chr4 (382-435)||(52772781-52772834)
chr4 (369-425)||(12158153-12158208)
chr4 (382-437)||(31848763-31848818)
chr4 (382-426)||(55408570-55408613)
[»] chr3 (47 HSPs)
chr3 (324-437)||(26165543-26165663)
chr3 (373-437)||(55026759-55026823)
chr3 (374-433)||(46123947-46124006)
chr3 (324-437)||(30418418-30418538)
chr3 (369-437)||(20139376-20139445)
chr3 (369-437)||(6048685-6048753)
chr3 (369-437)||(17466531-17466599)
chr3 (369-437)||(25790764-25790832)
chr3 (369-437)||(36178693-36178761)
chr3 (382-437)||(50415819-50415874)
chr3 (369-435)||(47144189-47144255)
chr3 (369-437)||(5845129-5845197)
chr3 (369-437)||(29701698-29701766)
chr3 (369-437)||(41183290-41183358)
chr3 (369-437)||(52000051-52000119)
chr3 (382-437)||(11908048-11908103)
chr3 (324-434)||(51999229-51999346)
chr3 (369-435)||(32120429-32120495)
chr3 (369-435)||(42560917-42560983)
chr3 (369-435)||(44084325-44084391)
chr3 (373-435)||(51304358-51304420)
chr3 (369-430)||(43473906-43473967)
chr3 (369-437)||(6832400-6832468)
chr3 (369-437)||(38572143-38572211)
chr3 (344-437)||(12974652-12974753)
chr3 (382-437)||(27847438-27847493)
chr3 (382-437)||(50734045-50734100)
chr3 (382-437)||(50778755-50778810)
chr3 (369-435)||(4045996-4046062)
chr3 (383-424)||(28155230-28155271)
chr3 (369-436)||(138991-139059)
chr3 (369-436)||(10426421-10426488)
chr3 (382-437)||(48886975-48887030)
chr3 (375-437)||(49357486-49357548)
chr3 (369-427)||(25832724-25832781)
chr3 (382-423)||(37183840-37183881)
chr3 (369-437)||(41890550-41890618)
chr3 (369-437)||(42601494-42601562)
chr3 (369-437)||(42601777-42601845)
chr3 (369-437)||(49823159-49823227)
chr3 (369-437)||(51427116-51427184)
chr3 (369-428)||(49147287-49147345)
chr3 (369-437)||(33935007-33935075)
chr3 (382-426)||(35853193-35853236)
chr3 (382-437)||(37410408-37410463)
chr3 (382-426)||(43022677-43022720)
chr3 (382-426)||(49710390-49710433)
[»] scaffold0016 (1 HSPs)
scaffold0016 (324-435)||(66063-66181)
[»] chr8 (26 HSPs)
chr8 (324-435)||(40283437-40283555)
chr8 (324-436)||(43524381-43524500)
chr8 (324-437)||(1958169-1958289)
chr8 (324-437)||(13947328-13947448)
chr8 (369-435)||(26244511-26244577)
chr8 (383-436)||(35099463-35099516)
chr8 (369-437)||(1634830-1634898)
chr8 (373-437)||(12272471-12272535)
chr8 (369-437)||(42859939-42860007)
chr8 (369-437)||(45101014-45101082)
chr8 (382-437)||(43525078-43525133)
chr8 (374-437)||(44149889-44149952)
chr8 (326-435)||(29731659-29731774)
chr8 (388-437)||(23549746-23549795)
chr8 (369-437)||(43618338-43618406)
chr8 (384-437)||(15053661-15053714)
chr8 (382-435)||(35931889-35931942)
chr8 (369-427)||(31129502-31129560)
chr8 (383-437)||(5735315-5735369)
chr8 (369-437)||(18029488-18029556)
chr8 (369-437)||(34955655-34955723)
chr8 (369-436)||(5212305-5212372)
chr8 (369-437)||(44503181-44503249)
chr8 (383-437)||(36912445-36912499)
chr8 (369-437)||(41477197-41477265)
chr8 (386-437)||(26632142-26632193)
[»] chr5 (32 HSPs)
chr5 (344-437)||(23089500-23089600)
chr5 (324-436)||(3454698-3454816)
chr5 (326-437)||(29619003-29619121)
chr5 (324-437)||(25670895-25671015)
chr5 (324-435)||(13479815-13479934)
chr5 (369-437)||(19241330-19241398)
chr5 (369-437)||(31013833-31013901)
chr5 (324-437)||(32976565-32976685)
chr5 (369-437)||(31008374-31008442)
chr5 (324-435)||(40888856-40888974)
chr5 (382-437)||(27942518-27942573)
chr5 (369-437)||(42806989-42807057)
chr5 (382-437)||(30648102-30648157)
chr5 (369-435)||(39238428-39238494)
chr5 (344-437)||(4219434-4219530)
chr5 (369-437)||(7651017-7651085)
chr5 (382-437)||(36572409-36572464)
chr5 (385-435)||(42317918-42317968)
chr5 (369-437)||(25652827-25652895)
chr5 (369-436)||(27407032-27407100)
chr5 (389-437)||(39008514-39008562)
chr5 (369-428)||(41153005-41153063)
chr5 (383-436)||(4938213-4938267)
chr5 (369-437)||(4577019-4577087)
chr5 (369-437)||(8176292-8176360)
chr5 (373-428)||(34709895-34709950)
chr5 (373-431)||(32363610-32363668)
chr5 (369-437)||(14278843-14278911)
chr5 (382-427)||(25032380-25032424)
chr5 (385-437)||(23649157-23649209)
chr5 (385-437)||(23809362-23809414)
chr5 (382-437)||(41263389-41263444)
[»] chr7 (27 HSPs)
chr7 (369-437)||(35029098-35029166)
chr7 (324-435)||(45549610-45549728)
chr7 (324-437)||(36518478-36518598)
chr7 (369-437)||(40302480-40302548)
chr7 (382-437)||(39769757-39769812)
chr7 (369-435)||(30566615-30566681)
chr7 (369-437)||(5813113-5813181)
chr7 (369-437)||(47159484-47159552)
chr7 (386-435)||(33508517-33508566)
chr7 (369-437)||(32130260-32130328)
chr7 (369-437)||(42881373-42881441)
chr7 (382-437)||(20354251-20354306)
chr7 (382-437)||(30720148-30720203)
chr7 (369-436)||(32748812-32748879)
chr7 (324-437)||(26812076-26812196)
chr7 (382-435)||(38351607-38351660)
chr7 (388-435)||(33078776-33078823)
chr7 (393-437)||(37951788-37951832)
chr7 (382-437)||(22191248-22191303)
chr7 (382-437)||(22656695-22656750)
chr7 (380-437)||(25038582-25038639)
chr7 (369-435)||(37887862-37887928)
chr7 (369-437)||(114505-114573)
chr7 (369-437)||(22737584-22737652)
chr7 (382-437)||(21654874-21654929)
chr7 (382-426)||(43571095-43571138)
chr7 (382-437)||(48984935-48984990)
[»] chr1 (35 HSPs)
chr1 (324-437)||(51494461-51494581)
chr1 (369-436)||(48404342-48404409)
chr1 (369-437)||(31159399-31159467)
chr1 (369-437)||(36230369-36230437)
chr1 (369-436)||(37822581-37822649)
chr1 (369-437)||(45239150-45239218)
chr1 (369-437)||(45456140-45456208)
chr1 (369-437)||(48388097-48388165)
chr1 (369-436)||(37646550-37646617)
chr1 (369-435)||(19578901-19578967)
chr1 (369-435)||(31468145-31468211)
chr1 (324-436)||(23092729-23092848)
chr1 (369-437)||(2478317-2478385)
chr1 (369-437)||(27630449-27630517)
chr1 (382-430)||(35847117-35847165)
chr1 (369-437)||(37420333-37420401)
chr1 (324-437)||(51156877-51156997)
chr1 (385-435)||(14096719-14096769)
chr1 (369-437)||(8464111-8464179)
chr1 (382-435)||(30878535-30878588)
chr1 (369-437)||(37691279-37691347)
chr1 (369-436)||(29523715-29523782)
chr1 (369-436)||(33164424-33164491)
chr1 (382-437)||(45623519-45623574)
chr1 (369-437)||(17783389-17783457)
chr1 (369-437)||(44334301-44334369)
chr1 (369-437)||(44929279-44929347)
chr1 (369-436)||(47300487-47300554)
chr1 (369-431)||(8468336-8468398)
chr1 (385-437)||(29919398-29919451)
chr1 (369-437)||(44451259-44451327)
chr1 (369-437)||(44651085-44651153)
chr1 (373-437)||(51520233-51520298)
chr1 (386-437)||(52933757-52933808)
chr1 (386-437)||(52941392-52941443)
[»] chr2 (29 HSPs)
chr2 (369-436)||(17485833-17485900)
chr2 (369-435)||(24997096-24997162)
chr2 (373-437)||(1073073-1073137)
chr2 (369-437)||(4296761-4296829)
chr2 (369-437)||(12855035-12855103)
chr2 (369-437)||(22351604-22351672)
chr2 (369-437)||(30822573-30822641)
chr2 (369-437)||(43021757-43021825)
chr2 (386-437)||(9117845-9117896)
chr2 (369-437)||(8852073-8852141)
chr2 (369-437)||(17929245-17929313)
chr2 (369-437)||(36209464-36209532)
chr2 (373-435)||(44280012-44280074)
chr2 (369-425)||(7763489-7763545)
chr2 (333-436)||(39490116-39490226)
chr2 (382-437)||(1308687-1308742)
chr2 (369-437)||(7588492-7588562)
chr2 (382-437)||(14382996-14383051)
chr2 (383-427)||(6362983-6363027)
chr2 (369-436)||(36526837-36526904)
chr2 (369-437)||(9074214-9074282)
chr2 (369-437)||(37245517-37245585)
chr2 (369-436)||(1987135-1987202)
chr2 (369-427)||(14152067-14152125)
chr2 (369-426)||(927893-927949)
chr2 (382-427)||(5146711-5146756)
chr2 (369-437)||(13151473-13151542)
chr2 (382-437)||(31192973-31193028)
chr2 (382-437)||(38901749-38901804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (369-437)||(57732-57800)
[»] scaffold0362 (1 HSPs)
scaffold0362 (324-433)||(5316-5432)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 1775424 - 1775121
Alignment:
Q  18 ctatcaactctcataatcctgtaaatcccataaggaagacacatacgcaataggacataaaacactaaccccacaaatattagtactatagctataatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1775424 ctatcaactctcataatcctgtaaatcccataaggaagacacatacgcaataggacataaaacactagccccacaaatattagtactatagctataatag 1775325  T
Q  118 ---ccattctcaacactcaatgatgcaaagactaaaaaatttctaaacgtgaagcttcatttatcagtttgaatatttataagacaaccttttaaattag 214  Q
       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||    
T  1775324 atgccattctcaacactcaatgatgcaaaaactaaaaaatttctaaacgtgaagcttcattcatcagtttgaatatttataagacagccctttaaattag 1775225  T
Q  215 caaagattttcgtcactttctactatgtagtaccaaaaatctaccaaagagaaagataactataagtaaaaagtaaagtacaagaaacagtgagccagaa 314  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1775224 caaagattttcgtcacttt---ctatgtagtaccaaaaatctaccaaagagaaagttaactataagtaaaaagtaaagtacaagaaacagtgagccagaa 1775128  T
Q  315 ggtaact 321  Q
    |||||||    
T  1775127 ggtaact 1775121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 631532 - 631600
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  631532 attcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacctctccaatgg 631600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 8660573 - 8660641
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8660573 attcccaacactccacatcattttctctctcttaattcaacacacattcaatttttacctctccaatgg 8660641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 34838595 - 34838663
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  34838595 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 34838663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 8669909 - 8669972
Alignment:
Q  374 caacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8669909 caacacttcacattattttctctctcttaattcaacacccattcaatttttacctctccaatgg 8669972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 12501846 - 12501913
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  12501846 attctcaacaatccacatcattttctctctcttaattcaacacccattcaatttttacctctctaatg 12501913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 12512931 - 12512994
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  12512931 tcaacattccacatcattttttctctcttaattcaacacccattcaatttttacctctccaatg 12512994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 10883899 - 10883953
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10883899 cacatcattttctctctcttaattcaacacccattcaatttttacctctccaatg 10883953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 30446271 - 30446325
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  30446271 cacatcattttctctctcttaattcaacacccattcaatttttacctctccaatg 30446325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 26654376 - 26654327
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26654376 tcattttctctctcataattcaacacccattcaatttttacctctccaat 26654327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 26760346 - 26760297
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26760346 tcattttctctctcataattcaacacccattcaatttttacctctccaat 26760297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 34328295 - 34328363
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  34328295 attcccaacactccacatcattttatctctcttaattcaacactcattcaatttttacatctccaatgg 34328363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 8218960 - 8219027
Alignment:
Q  370 ttctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||| | ||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  8218960 ttctcaacactccacattattttctctctcttaattcaacacccattcaacttttacctctccaatgg 8219027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 24933337 - 24933271
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattca--atttttacctctccaatgg 437  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  24933337 tcaacactccacattattttctctctcataattcaacactcattcaatatttttacctctccaatgg 24933271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 197818 - 197885
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | ||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  197818 attcccaacactccacgtcattttctctctcttaattcaacacccattcaatttttacatctccaatg 197885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 2503257 - 2503307
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  2503257 atcattttctctct--taattcaacacccattcaatttttacctctccaatgg 2503307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 17961321 - 17961253
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| ||||||||||  ||| |||||||||||||||||||||    
T  17961321 attcccaacactccacataattttctctctcttaattcaacaaacatacaatttttacctctccaatgg 17961253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 24348447 - 24348515
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||  ||||||||||  |||||||||||||||||| ||||||    
T  24348447 attcccaacactccacatcattttctctcttttaattcaacatccattcaatttttacctcttcaatgg 24348515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 32359760 - 32359826
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaat 435  Q
    |||| ||||||| |||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||    
T  32359760 attcccaacattccacatcattttctctctc-ttattcaacactcattccatttttaccctctccaat 32359826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 6380546 - 6380478
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||    
T  6380546 attcccaacactccacatcattttctctctc-ttattcaacacacattcaacttttaccctctccaatgg 6380478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 29428575 - 29428519
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||    
T  29428575 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttac 29428519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 6725669 - 6725626
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  6725669 cacatcattttctctctctta-ttcaacactcattcaacttttac 6725626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 45081521 - 45081401
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||||||||||||||||||||||||||| ||||||||||||       |||| ||||| | |||||||||||||||||||||||||||||||||||    
T  45081521 accatgtacaatgggaaaatattttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctctctcataattcaacactcatt 45081422  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  45081421 caatttttacctctccaatgg 45081401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 435
Target Start/End: Complemental strand, 13094499 - 13094381
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||||||||||||||||| |||||||||||| |||||||||||        |||| ||||| | |||||||||||||||||||||||||||||| ||||    
T  13094499 accatgtacaatgggaaaaaattttcaatacccttcaacacccattttttcaattcccaacactccacatcattttctctctcataattcaacacccatt 13094400  T
Q  417 caatttttacctctccaat 435  Q
    ||||||||| |||||||||    
T  13094399 caatttttatctctccaat 13094381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 35809126 - 35809244
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||||||| | |||| | |||||||||| ||||||| ||||       |||| ||||||| |||||||||||||||||||||||||||||| ||||    
T  35809126 accatgtacaatagaaaaaaaatttcaatacccttcaacatccactttttcaattcccaacattccacatcattttctctctcataattcaacacccatt 35809225  T
Q  417 caatttttacctctccaat 435  Q
    |||||||||||||||||||    
T  35809226 caatttttacctctccaat 35809244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 48403944 - 48403890
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48403944 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 48403890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 435
Target Start/End: Original strand, 4981473 - 4981590
Alignment:
Q  325 ccatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattc 417  Q
    |||||||||||||||||| | |||||||| | ||||||||||||       |||| ||||| | ||||||||||||||||||||||||||||||  |||     
T  4981473 ccatgtacaatgggaaaaaaatttcaatatccttcaacacccactttttcaattcccaacactccacatcattttctctctcataattcaacacctattt 4981572  T
Q  418 aatttttacctctccaat 435  Q
    ||||||||||||||||||    
T  4981573 aatttttacctctccaat 4981590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 52017373 - 52017427
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52017373 acatcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 52017427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 34464075 - 34464014
Alignment:
Q  374 caacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  34464075 caacatttcacatcattttctctctcttaattcaacaccctttcaatttttacctctccaat 34464014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 2215339 - 2215271
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2215339 attcccaacactccacataattttctctctcttaattcaacactcattcaatttttacctctccaatgg 2215271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 3533364 - 3533296
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3533364 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 3533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 6290615 - 6290683
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  6290615 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 6290683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 8991798 - 8991866
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  8991798 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 8991866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 33604672 - 33604740
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  33604672 attcccaacactccacatcattttctctatcttaattcaacactcattcaatttttacctctccaatgg 33604740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 38173570 - 38173638
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  38173570 attcccaacactccacatcattttctctctcttaattcaacactcatccaatttttacctctccaatgg 38173638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 40721050 - 40721118
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  40721050 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 40721118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 46917568 - 46917500
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  46917568 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 46917500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 48506659 - 48506595
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48506659 tcaacactccacatcattttctctctcttaattcaacactcattcaatttttaactctccaatgg 48506595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 34199326 - 34199259
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34199326 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatg 34199259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 23540469 - 23540416
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  23540469 acatcattttctctctcttaattcaacacccattcaatttttacctctccaatg 23540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 3618510 - 3618442
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  3618510 attcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttacctctccaatgg 3618442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 23389986 - 23389918
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23389986 attcccaacactccacattattttctctctcataattcaatactcattcaattgttacctctccaatgg 23389918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 55560536 - 55560468
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  55560536 attcccaacactccacatcattttctctctcttaattcaacacctattcaatttttacctctccaatgg 55560468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 19272798 - 19272864
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  19272798 attcccaacactccacatcattttctctctcataattcaacatccattcaatttttatctctccaat 19272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 31336411 - 31336346
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaa 434  Q
    |||||||||| | ||| |||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  31336411 attctcaacactccacgtcattttctctctcttaattcaacaccctttcaatttttacctctccaa 31336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 13110576 - 13110644
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  13110576 attcccaacactccacaacattttttctctcttaattcaacacccattcaatttttacctctccaatgg 13110644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 16020862 - 16020930
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  16020862 attcccaacactccacattattttctctctcttaattcaacatccattcaatttttacctctccaatgg 16020930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 28899347 - 28899415
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||| ||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  28899347 attcccaatattccacatcgttttctctctcttaattcaacacccattcaatttttacctctctaatgg 28899415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 16175068 - 16175006
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||| | |||||||||||||| ||| ||||||||||| | |||||||||||||||||||||    
T  16175068 tcaacactccacatcattttctcactcttaattcaacaccctttcaatttttacctctccaat 16175006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 27863730 - 27863796
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||| | ||| ||||||||||| | |||||||||||  |||||||||||||||||||||||    
T  27863730 attctcaacactccacgtcattttctctgttataattcaacatccattcaatttttacctctccaat 27863796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 27142369 - 27142319
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  27142369 atcattttctctct--taattcaacacccattcaatttttacctctccaatgg 27142319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 17329965 - 17329901
Alignment:
Q  374 caacatttcacatcattttctctctcataattcaacactcattcaat-ttttacctctccaatgg 437  Q
    ||||||| |||||||||||||||||||||||||||||   ||||||| ||||||||| |||||||    
T  17329965 caacattccacatcattttctctctcataattcaacatctattcaattttttacctccccaatgg 17329901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 33523285 - 33523353
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaa-tttttacctctccaatg 436  Q
    |||| ||||||| |||||||||||||||||| ||||||||||  ||||||| |||||| ||||||||||    
T  33523285 attcccaacattccacatcattttctctctcttaattcaacatccattcaattttttatctctccaatg 33523353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 53348114 - 53348050
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatg 436  Q
    ||||||||||||||||||||||||||| | |||||||| ||||| || ||||| |||||||||||    
T  53348114 tcaacatttcacatcattttctctctctttattcaacagtcatttaacttttaccctctccaatg 53348050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 33077917 - 33077863
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||  ||||| ||||| |||||||||||||||||||||||||    
T  33077917 cacatcattttctctctt-taatttaacacccattcaatttttacctctccaatgg 33077863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 56054032 - 56054098
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| |||||| |||| |||||||||||| |||||||||||    
T  56054032 attcccaacactccacatcattttctctctcttaattctacacccattcaattttt-cctctccaatg 56054098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 18469425 - 18469356
Alignment:
Q  369 attctcaacatttcacatcattttct-ctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||| | ||||| ||||||||||  |||||||||||||||||||||||||    
T  18469425 attcccaacactccacatcatttttttctctcttaattcaacatccattcaatttttacctctccaatgg 18469356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 53184153 - 53184085
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| |||||||||||||||||||| | ||||||||||||||||| ||| | ||||||||||||    
T  53184153 attcccaacacttcacatcattttctctctc-ttattcaacactcattcaactttaaccctctccaatgg 53184085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 52772781 - 52772834
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    ||||| |||||||||||  ||||||||||| | ||||||||||| |||||||||    
T  52772781 cacattattttctctcttttaattcaacaccctttcaatttttatctctccaat 52772834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 12158153 - 12158208
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta 425  Q
    |||| ||||| | |||||||||||||||||| | ||||||||||||||||| |||||    
T  12158153 attcccaacactccacatcattttctctctc-ttattcaacactcattcaactttta 12158208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 31848818 - 31848763
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | |||||||||||||||||  |||| ||||||||||||    
T  31848818 cacatcattttctctctc-ttattcaacactcattcaacatttaccctctccaatgg 31848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 55408613 - 55408570
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  55408613 cacatcattttctctctctta-ttcaacactcattcaacttttac 55408570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 26165663 - 26165543
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||       |||| ||||| | |||||||||||||||||||||||||||||| ||||    
T  26165663 accatgtacaatgggaaaatattttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacacccatt 26165564  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  26165563 caatttttacctctccaatgg 26165543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 55026759 - 55026823
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55026759 tcaacacttcacttcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 55026823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 46123947 - 46124006
Alignment:
Q  374 caacatttcacatcattttctctctcataattcaacactcattcaatttttacctctcca 433  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46123947 caacattctacatcattttctctctcataattcaacactcattcaatttttacctctcca 46124006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 30418538 - 30418418
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||  ||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||    
T  30418538 accatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatt 30418439  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  30418438 caatttttacctctccaatgg 30418418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 20139376 - 20139445
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  20139376 attctcaacacttcacatcattttctctctcttaattcaacactcattcaacttttaccttctccaatgg 20139445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 6048753 - 6048685
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  6048753 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 6048685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 17466531 - 17466599
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  17466531 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 17466599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 25790832 - 25790764
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  25790832 attcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacctctccaatgg 25790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 36178761 - 36178693
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  36178761 attcccaacacttcaaatcattttctctctcataattcaacatccattcaatttttacctctccaatgg 36178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 50415874 - 50415819
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  50415874 cacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 50415819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 47144189 - 47144255
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  47144189 attcccaacactccacatcattttctctctcttaattcaacacttattcaatttttacctctccaat 47144255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 5845197 - 5845129
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  5845197 attcccaacactccacatcattttatctctcttaattcaacactcattcaatttttacatctccaatgg 5845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 29701698 - 29701766
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  29701698 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacccctccaatgg 29701766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 41183290 - 41183358
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  41183290 attcccaacactccacatcattttctctctcttaattcaacacccatacaatttttacctctccaatgg 41183358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 52000119 - 52000051
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  52000119 attcccaacactccacatcattttctctctcataattcaacatttattcaatttttacatctccaatgg 52000051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 11908048 - 11908103
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  11908048 cacatcattttttctctcataattcaacacccattcaatttttacctcttcaatgg 11908103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 434
Target Start/End: Complemental strand, 51999346 - 51999229
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||| ||||| | | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||    
T  51999346 accatttacaatggcaaaatatattcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatt 51999247  T
Q  417 caatttttacctctccaa 434  Q
    ||||||||| ||||||||    
T  51999246 caatttttatctctccaa 51999229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 32120495 - 32120429
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  32120495 attcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttacctctccaat 32120429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 42560917 - 42560983
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||||| |||||||||||||||||| ||||||||||| | ||||||||||| |||||||||    
T  42560917 attcccaacattccacatcattttctctctcttaattcaacaccctttcaatttttaactctccaat 42560983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 44084325 - 44084391
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  44084325 attcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttacctctccaat 44084391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 51304358 - 51304420
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||| | ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  51304358 tcaacactccacgtcattttctctatcataattcaacacccattcaatttttacctctccaat 51304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 43473906 - 43473967
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctct 430  Q
    |||| ||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  43473906 attcccaacattccagatcattttctctctcttaattcaacacccattcaatttttacctct 43473967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 6832400 - 6832468
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||    
T  6832400 attcccaacactccacatcattttctttcttttaattcaacactcattcaatttttatctctccaatgg 6832468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 38572211 - 38572143
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| | ||||| |||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  38572211 attctcaacactccacattattttctctctcttaattcaacatctattcaatttttacctctccaatgg 38572143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 12974652 - 12974753
Alignment:
Q  344 attttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattca-atttttacctctccaat 435  Q
    |||||||||||| ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  12974652 attttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccattcatttttttacctctccaat 12974751  T
Q  436 gg 437  Q
    ||    
T  12974752 gg 12974753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 27847438 - 27847493
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||    
T  27847438 cacatcattttctctctcttaattcaacacccatttaatttttacctcttcaatgg 27847493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 50734045 - 50734100
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  50734045 cacatcattttctctctcttaattcaatacctattcaatttttacctctccaatgg 50734100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 50778810 - 50778755
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||    
T  50778810 cacatcattttctctctcttaattcaatacctattcaatttttacctctccaatgg 50778755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 4045996 - 4046062
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| | || ||||||||||||||||||    
T  4045996 attcccaacactccacatcattttctctctcttaattcaacacccttttaatttttacctctccaat 4046062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 28155271 - 28155230
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaattttt 424  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  28155271 acataattttctctctcataattcaacactcattcaattttt 28155230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 138991 - 139059
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatg 436  Q
    |||| ||||| | ||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||    
T  138991 attcccaacactccacatcattttgtctctcttaattcaacactcattcaacttttaccctctccaatg 139059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 10426488 - 10426421
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||  ||||| || || ||||||||||||||||||||||||    
T  10426488 attcccaacactccacatcattttctctcttttaatttaatacccattcaatttttacctctccaatg 10426421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 48887030 - 48886975
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||| |||||||||||| ||||| ||||  |||||||||||||||||||||||||    
T  48887030 cacattattttctctctcttaatttaacatccattcaatttttacctctccaatgg 48886975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 49357548 - 49357486
Alignment:
Q  375 aacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    ||||||||| ||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  49357548 aacatttcatatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 49357486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 25832781 - 25832724
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    |||| ||||| |||||||||||||||||||| | ||||||||||||||||| |||||||    
T  25832781 attcccaacacttcacatcattttctctctc-ttattcaacactcattcaacttttacc 25832724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 37183881 - 37183840
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttt 423  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  37183881 cacatcattttctctctcttaattcaacacccattcaatttt 37183840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 41890550 - 41890618
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  41890550 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 41890618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 42601562 - 42601494
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  42601562 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 42601494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 42601777 - 42601845
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||    
T  42601777 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccttctccaatgg 42601845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 49823227 - 49823159
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||    
T  49823227 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccatctccaatgg 49823159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 51427116 - 51427184
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||    
T  51427116 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccatctccaatgg 51427184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 49147345 - 49147287
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacct 428  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||||    
T  49147345 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttacct 49147287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 33935007 - 33935075
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||| |||| ||||| ||||||||||||    
T  33935007 attcccaacactccacatcattttctctctc-ttattcaacactcaatcaacttttaccctctccaatgg 33935075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 35853236 - 35853193
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  35853236 cacatcattttctctctctta-ttcaacactcattcaacttttac 35853193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 37410463 - 37410408
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||    
T  37410463 cacatcattttctctctc-ttattcaacattcattcaacttttaccctctccaatgg 37410408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 43022677 - 43022720
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  43022677 cacatcattttctctctctta-ttcaacactcattcaacttttac 43022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 49710433 - 49710390
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  49710433 cacatcattttctctctctta-ttcaacactcattcaacttttac 49710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 435
Target Start/End: Complemental strand, 66181 - 66063
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||       |||||||||| | |||||||||||||||||||||||||||||||||||    
T  66181 accatgtacaatgggaaaaaaatttcaataccttttaacacctactttttcaattctcaacactccacatcattttctctctcataattcaacactcatt 66082  T
Q  417 caatttttacctctccaat 435  Q
    |||||||||||||| ||||    
T  66081 caatttttacctcttcaat 66063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 40283437 - 40283555
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||||||||| |||| | |||||||||||||||||| ||||       |||| ||||| | |||||||||||||||||||||||||||||| ||||    
T  40283437 accatgtacaatggaaaaaaaatttcaatacctttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacacccatt 40283536  T
Q  417 caatttttacctctccaat 435  Q
    |||||||||||||||||||    
T  40283537 caatttttacctctccaat 40283555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 43524500 - 43524381
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||||||||||||  ||| | |||||||||| ||||||| ||||       |||| ||||| | |||||||||||||||||||||||||||||||||||    
T  43524500 accatgtacaatggttaaaaaatttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctctctcataattcaacactcatt 43524401  T
Q  417 caatttttacctctccaatg 436  Q
    ||||||||||||||||||||    
T  43524400 caatttttacctctccaatg 43524381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 1958289 - 1958169
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||  ||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||    
T  1958289 accatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatt 1958190  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  1958189 caatttttacctctccaatgg 1958169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 13947328 - 13947448
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||| ||||||| |||| | |||||||||| ||||||||| ||       |||| ||||| | ||||||||||||| |||||||||||||||| ||||    
T  13947328 accatgaacaatggtaaaaaaatttcaatacccttcaacacctactttttcaattcccaacactccacatcattttctttctcataattcaacacccatt 13947427  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  13947428 caatttttacctctccaatgg 13947448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 26244511 - 26244577
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26244511 attcccaacactccacatcattttctctctcataattcaacacacattcaatttttacctctccaat 26244577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 35099463 - 35099516
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35099463 acatcattttctctctcttaattcaacactcattcaatttttacctctccaatg 35099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 1634898 - 1634830
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  1634898 attctcaacactccacatcattttctctctcataattcaacacccattcagtttttacctctctaatgg 1634830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 12272535 - 12272471
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12272535 tcaacactccacttcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 12272471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 42859939 - 42860007
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  42859939 attcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacatctccaatgg 42860007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 45101082 - 45101014
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  45101082 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 45101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 43525133 - 43525078
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  43525133 cacatcattttctctcttttaattcaacactcattcaatttttacctctccaatgg 43525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 44149889 - 44149952
Alignment:
Q  374 caacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  44149889 caacattccacatcattttctctttcataattcaatacccattcaatttttacctctccaatgg 44149952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 29731659 - 29731774
Alignment:
Q  326 catgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattca 418  Q
    ||||||||||||||||| | |||||||||| ||||||||||||       |||| ||||| | ||| ||||||| |||||||||||||||||| ||||||    
T  29731659 catgtacaatgggaaaaaaatttcaatacccttcaacacccactttttcaattcccaacactccacgtcatttt-tctctcataattcaacacccattca 29731757  T
Q  419 atttttacctctccaat 435  Q
    ||||||| |||||||||    
T  29731758 atttttaactctccaat 29731774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 23549746 - 23549795
Alignment:
Q  388 attttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23549746 attttctctctcataattcaacacccattcaatttttacctctccaatgg 23549795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 43618406 - 43618338
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  43618406 attcccaacactccacatcattttctctctcttaattcaacatccattcaatttttacctctccaatgg 43618338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 15053661 - 15053714
Alignment:
Q  384 catcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  15053661 catcattttctctctcttaattcaacacccattcaatttttaccactccaatgg 15053714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 35931889 - 35931942
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  35931889 cacatcattttctctctcttaattcaacaccctttcaatttttacctctccaat 35931942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 31129560 - 31129502
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    |||||||||| | |||||||||||||||||| |||||| |||||||||||| |||||||    
T  31129560 attctcaacactccacatcattttctctctcttaattcgacactcattcaacttttacc 31129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 5735315 - 5735369
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  5735315 acatcattttctctctctta-ttcaacactcattcaatttttaccctctccaatgg 5735369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 18029556 - 18029488
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  18029556 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 18029488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 34955723 - 34955655
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  34955723 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 34955655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 5212305 - 5212372
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| |||||||||||    
T  5212305 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatg 5212372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 44503181 - 44503249
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||| |||||||||||||| ||||| ||||| ||||||||||||| |||| ||||||    
T  44503181 attcccaacactccacgtcattttctctctcttaattgaacacccattcaatttttatctcttcaatgg 44503249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 36912445 - 36912499
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    ||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  36912445 acatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 36912499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 41477197 - 41477265
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||| ||||| | ||| |||||||||||||| || |||||||||||||||| ||||||| ||||||||||    
T  41477197 attcccaacactccacgtcattttctctctctta-ttcaacactcattcaacttttaccatctccaatgg 41477265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 26632193 - 26632142
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||||    
T  26632193 tcattttctctctctta-ttcaacactcattcaacttttactctctccaatgg 26632142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 23089500 - 23089600
Alignment:
Q  344 attttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||||| ||||||||||||       |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23089500 attttcaatacccttcaacacccacttttttaattcccaacacttcacatcattttctctctcataattcaacacccattcaatttttacctctccaatg 23089599  T
Q  437 g 437  Q
    |    
T  23089600 g 23089600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 324 - 436
Target Start/End: Original strand, 3454698 - 3454816
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||| |||||||||| | |||||||||| ||||||| ||||       |||||||||| | |||||||||||||||||||||||||||||||||||    
T  3454698 accatgtataatgggaaaaaaatttcaatacccttcaacatccactttttcaattctcaacactccacatcattttctctctcataattcaacactcatt 3454797  T
Q  417 caatttttacctctccaatg 436  Q
    ||||||||| ||||||||||    
T  3454798 caattttta-ctctccaatg 3454816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 29619121 - 29619003
Alignment:
Q  326 catgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattca 418  Q
    |||||||||||| |||| | |||||||||| ||||||||||||       |||| ||||| | ||||||||||||| |||||||||||||||| ||||||    
T  29619121 catgtacaatggcaaaaaaatttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctttctcataattcaacacccattca 29619022  T
Q  419 atttttacctctccaatgg 437  Q
    |||||||||||||||||||    
T  29619021 atttttacctctccaatgg 29619003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 25671015 - 25670895
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||||||||||||  | | |||||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||||||||||||||||||||    
T  25671015 accatgtacaatggttacaaattttcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcataattcaacactcatt 25670916  T
Q  417 caatttttacctctccaatgg 437  Q
    ||||||||| |||||||||||    
T  25670915 caatttttaactctccaatgg 25670895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 324 - 435
Target Start/End: Complemental strand, 13479934 - 13479815
Alignment:
Q  324 accatgtacaatgggaaaatatt-ttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcat 415  Q
    ||||||||||||||||||| |   ||||||||| ||||||||||||       |||| ||||| | ||||||||||||||||||||||||||||||||||    
T  13479934 accatgtacaatgggaaaaaaaaattcaatacccttcaacacccacttttttaattcccaacactccacatcattttctctctcataattcaacactcat 13479835  T
Q  416 tcaatttttacctctccaat 435  Q
    ||||||||||| ||||||||    
T  13479834 tcaatttttacatctccaat 13479815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 19241330 - 19241398
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  19241330 attctcaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 19241398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 31013901 - 31013833
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31013901 attcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 31013833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 32976685 - 32976565
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||  ||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||    
T  32976685 accatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatt 32976586  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  32976585 caatttttacctctccaatgg 32976565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 31008442 - 31008374
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||    
T  31008442 attctcaacacttcacatcattttctctctcttaatttaacacccattcaatttttacctttccaatgg 31008374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 40888856 - 40888974
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||  ||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||| ||||    
T  40888856 accatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacacccatt 40888955  T
Q  417 caatttttacctctccaat 435  Q
    |||||||||||||||||||    
T  40888956 caatttttacctctccaat 40888974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 27942518 - 27942573
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27942518 cacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 27942573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 42807057 - 42806989
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  42807057 attctcaacactccacatcattttctctctcttaattcaacacccattcaatttttacatctctaatgg 42806989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 30648157 - 30648102
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  30648157 cacaccattttatctctcttaattcaacactcattcaatttttacctctccaatgg 30648102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 39238428 - 39238494
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  39238428 attcccaacactccacatcattttctctctcataattcaacatccattcaatttttatctctccaat 39238494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 4219530 - 4219434
Alignment:
Q  344 attttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||||| ||||||||||||       |||| ||||| ||||||||||||||||    |||||||||||| ||||||||||||||||||||||||    
T  4219530 attttcaatacccttcaacacccactttttcaattcccaacacttcacatcattttctc----ataattcaacacccattcaatttttacctctccaatg 4219435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 7651017 - 7651085
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||    
T  7651017 attcccaacactccacatcattttctctctcttaattcaacacccatttaatttttacccctccaatgg 7651085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 36572464 - 36572409
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||    
T  36572464 cacatcattttctctctcttaattcaacacccattcaatttttatttctccaatgg 36572409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 42317918 - 42317968
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  42317918 atcattttctctctcttaattcaacaccctttcaatttttacctctccaat 42317968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 25652827 - 25652895
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| |||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  25652827 attcccaacacttcacatcattttctctctc-ttattcaacactcattgaatttttaccctctccaatgg 25652895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 27407100 - 27407032
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattc-aacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | ||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  27407100 attcccaacactccacattattttctctctcttaattctaacactcattcaacttttacctctccaatg 27407032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 39008514 - 39008562
Alignment:
Q  389 ttttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  39008514 ttttctctctcataattcaacatccattcaatttttacatctccaatgg 39008562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 41153063 - 41153005
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacct 428  Q
    |||||||||| | |||||||||||||||||| | ||||||||||||||||| ||||||||    
T  41153063 attctcaacactccacatcattttctctctc-ttattcaacactcattcaacttttacct 41153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 4938213 - 4938267
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaattttta-cctctccaatg 436  Q
    ||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||    
T  4938213 acatcattttctctctcttaattcaacactaattcaacttttaccctctccaatg 4938267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 4577019 - 4577087
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  4577019 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 4577087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 8176360 - 8176292
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  8176360 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 8176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 34709895 - 34709950
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacct 428  Q
    |||||||| ||| ||||||| |||||| ||||||||||| |||| |||||||||||    
T  34709895 tcaacattccacgtcattttttctctcttaattcaacacccatttaatttttacct 34709950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 32363668 - 32363610
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctc 431  Q
    |||||| | ||||| |||||||||||  ||||||||||| |||| ||||||||||||||    
T  32363668 tcaacactccacattattttctctcttttaattcaacacccatttaatttttacctctc 32363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 14278843 - 14278911
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||    
T  14278843 attcccaacactccacatcattttctctctc-ttattcaacattcattcaacttttaccctctccaatgg 14278911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 25032380 - 25032424
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    |||||||||||||||||| || |||||||||||||||| |||||||    
T  25032380 cacatcattttctctctctta-ttcaacactcattcaacttttacc 25032424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 23649209 - 23649157
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||| || |||||||||| | ||| ||||||||||||| ||||||    
T  23649209 atcattttctctttcttaattcaacatttatttaatttttacctcttcaatgg 23649157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 23809362 - 23809414
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||| || |||||||||| | ||| ||||||||||||| ||||||    
T  23809362 atcattttctctttcttaattcaacatttatttaatttttacctcttcaatgg 23809414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 41263389 - 41263444
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||    
T  41263389 cacatcattttctctctc-ttattcaacattcattcaacttttaccctctccaatgg 41263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 35029166 - 35029098
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35029166 attcccaacattccacatcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 35029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 435
Target Start/End: Complemental strand, 45549728 - 45549610
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||||||||||||||||| | |||||||||| ||||||| ||||       |||| ||||| | ||||||||||| |||||||||||||||||| ||||    
T  45549728 accatgtacaatgggaaaaaaatttcaatacccttcaacaaccactttttcaattcccaacactccacatcattttttctctcataattcaacacccatt 45549629  T
Q  417 caatttttacctctccaat 435  Q
    |||||||||||||||||||    
T  45549628 caatttttacctctccaat 45549610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 36518478 - 36518598
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||  ||||||| | ||||||||||||       |||| ||||| | |||||||||||||||||| ||||||||||||||||    
T  36518478 accatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaacactccacatcattttctctctcttaattcaacactcatt 36518577  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  36518578 caatttttacctctccaatgg 36518598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 40302548 - 40302480
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40302548 attcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 40302480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 39769757 - 39769812
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39769757 cacatcattttctctctcataattcaacactcattcaatttttacctctctaatgg 39769812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 30566615 - 30566681
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30566615 attctcaacactccacatcattttctctctcttaattcaacactcattcaatttttatctctccaat 30566681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 5813113 - 5813181
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  5813113 attcccaacactgcacatcattttctctctcttaattcaacacttattcaatttttacctctccaatgg 5813181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 47159552 - 47159484
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  47159552 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 47159484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 33508566 - 33508517
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33508566 tcattttctctctcttaattcaacactcattcaatttttacctctccaat 33508517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 32130328 - 32130260
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||    
T  32130328 attcccaacactccacatcattttctctctcataatttaatacccattcaatttttacctctccaatgg 32130260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 42881373 - 42881441
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  42881373 attcccaacactccacatcattttctctctcttaattcaacaccaattcaatttttacctctccaatgg 42881441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 20354251 - 20354306
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  20354251 cacatcattttttctatcataattcaacacccattcaatttttacctctccaatgg 20354306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 30720148 - 30720203
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  30720148 cacatcattttctctctcttaattcaacacccattcaatttttacctcttcaatgg 30720203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 32748812 - 32748879
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | ||||| |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  32748812 attcccaacactccacattattttctctctcataatttaacactcattcaatttttacatctccaatg 32748879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 26812076 - 26812196
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    |||||||||||||| |||| | |||||||||| |||||||||||        |||| ||||| | || |||||||| ||| ||||||||||| |||||||    
T  26812076 accatgtacaatggcaaaaaaatttcaatacccttcaacacccattttttcaattcccaacactccatatcattttatctttcataattcaatactcatt 26812175  T
Q  417 caatttttacctctccaatgg 437  Q
    ||| |||||||||||||||||    
T  26812176 caaattttacctctccaatgg 26812196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 38351607 - 38351660
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  38351607 cacatcattttctctttcataattcaacattcatttaatttttacctctccaat 38351660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 33078823 - 33078776
Alignment:
Q  388 attttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33078823 attttctctctcttaattcaacattcattcaatttttacctctccaat 33078776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 37951788 - 37951832
Alignment:
Q  393 ctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  37951788 ctctctcttaattcaacacccattcaatttttacctctccaatgg 37951832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 22191248 - 22191303
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  22191248 cacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 22191303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 22656695 - 22656750
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||  ||||||||||  |||| ||||||||||||| ||||||    
T  22656695 cacatcattttctctcttttaattcaacatccatttaatttttacctcttcaatgg 22656750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 25038639 - 25038582
Alignment:
Q  380 ttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||| ||||||||||||    
T  25038639 ttcacatcattttctctctc-ttattcgacactcattcaagttttaccctctccaatgg 25038582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 37887862 - 37887928
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | ||||||||||| |||||| ||||||||||  |||| ||||||||||||| ||||    
T  37887862 attcccaacactccacatcattttatctctcttaattcaacatccatttaatttttacctcttcaat 37887928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 114505 - 114573
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||| | |||||||||||||| || ||||| | ||||||||||    
T  114505 attctcaacactccacatcattttctctctc-ttattcaacactcatttaacttttatcatctccaatgg 114573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 22737652 - 22737584
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||| |||||||| ||||||| ||||||||||    
T  22737652 attcccaacactccacatcattttctctctc-ttattcaacattcattcaacttttaccttctccaatgg 22737584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 21654874 - 21654929
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | |||||||||||||||||  |||| ||||||||||||    
T  21654874 cacatcattttctctctc-ttattcaacactcattcaacatttaccctctccaatgg 21654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 43571138 - 43571095
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||||||||||||||||| || |||||||||||||||| ||||||    
T  43571138 cacatcattttctctctctta-ttcaacactcattcaacttttac 43571095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 48984935 - 48984990
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacc-tctccaatgg 437  Q
    |||||||||||||||||| | |||||||||||||||||  |||||| ||||||||||    
T  48984935 cacatcattttctctctc-ttattcaacactcattcaacatttaccatctccaatgg 48984990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 51494581 - 51494461
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||| ||||| | | ||||||||||||       |||||||||| | |||||||||||||||||| |||||||||| |||||    
T  51494581 accatttacaatggtaaaatatattcaacaaccttcaacacccacttttttaattctcaacactccacatcattttctctctcttaattcaacattcatt 51494482  T
Q  417 caatttttacctctccaatgg 437  Q
    |||||||||||||||||||||    
T  51494481 caatttttacctctccaatgg 51494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 48404342 - 48404409
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48404342 attcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacctctccaatg 48404409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 31159399 - 31159467
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  31159399 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 31159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 36230369 - 36230437
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  36230369 attcccaacacttcacatcattttatctctcttaattcaacacccattcaatttttacctctccaatgg 36230437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 37822581 - 37822649
Alignment:
Q  369 attctcaacatttcacatcattttctctc-tcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||||||||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  37822581 attctcaacactccacatcattttctctcctcttaattcaacactcattcaatttttacctctccaatg 37822649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 45239150 - 45239218
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  45239150 attcccaacactccacatcattttctctctctttattcaacactcattcaatttttacctctccaatgg 45239218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 45456208 - 45456140
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45456208 attcccaacactccacataattttctctctcttaattcaacactcattcaatttttacctctccaatgg 45456140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 48388165 - 48388097
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  48388165 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 48388097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 37646617 - 37646550
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37646617 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatg 37646550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 19578967 - 19578901
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19578967 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaat 19578901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 31468145 - 31468211
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  31468145 attcccaacactccacatcattttctctctcttaattcaacattcattcaatttttacctctccaat 31468211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 436
Target Start/End: Original strand, 23092729 - 23092848
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||| |||||||||  |||||||||||       |||| ||||| | ||| |||||||||||||| ||||||||||| ||||    
T  23092729 accatttacaatggcaaaatatattcaatacccctcaacacccactttttcaattcccaacactccacgtcattttctctctcttaattcaacacccatt 23092828  T
Q  417 caatttttacctctccaatg 436  Q
    || |||||||||||||||||    
T  23092829 cagtttttacctctccaatg 23092848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 2478385 - 2478317
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  2478385 attcccaacactccacatcattttctctctcttaattcaacaccctttcaatttttacctctccaatgg 2478317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 27630517 - 27630449
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  27630517 attcccaacactccacatcattttatctctcttaattcaacactcattcaatttttacatctccaatgg 27630449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 35847165 - 35847117
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctct 430  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35847165 cacatcattttctctctcataattcaacacccattcaatttttacctct 35847117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 37420401 - 37420333
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  37420401 attcccaacactccacatcattttatctctcttaattcaacactcattcaatttttacatctccaatgg 37420333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 51156997 - 51156877
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac--------attctcaacatttcacatcattttctctctcataattcaacactcat 415  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||        ||| |||||| | ||  |||||||||||||||||||| ||||| |||    
T  51156997 accatgtacaatgggaaaaaattttcaatacccttcaacactcacttttttcaattttcaacactccatgtcattttctctctcataatttaacacccat 51156898  T
Q  416 tcaatttttacctctccaatgg 437  Q
    |||| |||||||||||||||||    
T  51156897 tcaa-ttttacctctccaatgg 51156877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 14096719 - 14096769
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  14096719 atcattttatctctcttaattcaacactcattcaatttttacctctccaat 14096769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 8464111 - 8464179
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  8464111 attctcaacactccacatcattttctctctctta-ttcaacactcattcaatttttactctctccaatgg 8464179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 30878588 - 30878535
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  30878588 cacatcattttctctctcttaattcaacatccattcaatttttacctctccaat 30878535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 37691347 - 37691279
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  37691347 attcccaacactccacattattttctctctcttaattcaacatccattcaatttttacctctccaatgg 37691279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 29523715 - 29523782
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||| ||||||||||  |||||||||||||| |||||||||    
T  29523715 attcccaacactccacatcattttctctctcttaattcaacatccattcaatttttacatctccaatg 29523782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 33164424 - 33164491
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||||| || || ||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  33164424 attcccaacattccagattattttatctctcttaattcaacactcattcaatttttacatctccaatg 33164491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 45623574 - 45623519
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||    
T  45623574 cacatcattttctctctcttaattcaacactcatttaatttttatctctcctatgg 45623519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 17783389 - 17783457
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||| ||||||| |||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  17783389 attcccaacattccacatcattttctctctc-ttattcaacactcattcaacttttactctctccaatgg 17783457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 44334301 - 44334369
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||||||||| | |||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  44334301 attctcaacactccacatcattttctctctc-ttattcaacactcattcaacttttactctctccaatgg 44334369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 44929347 - 44929279
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    ||||||||||||||| ||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||    
T  44929347 attctcaacatttcaaatcattttctctct-tttattcaacactcattcaacttttaccctctccaatgg 44929279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 47300554 - 47300487
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    ||||||| || | |||||||||||||||||  ||||||||||| |||||||||||||| | |||||||    
T  47300554 attctcagcactccacatcattttctctcttttaattcaacacacattcaatttttacttttccaatg 47300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 8468336 - 8468398
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctc 431  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||| || |||||||||||    
T  8468336 attcccaacactccacatcattttctctctcttaattcaacacacatttaacttttacctctc 8468398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 29919398 - 29919451
Alignment:
Q  385 atcattttctctctcataattcaacactcattcaa-tttttacctctccaatgg 437  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||||||||||||    
T  29919398 atcattttctctctcttaattcaacacctattcaattttttacctctccaatgg 29919451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 44451327 - 44451259
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  44451327 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 44451259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 44651085 - 44651153
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  44651085 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 44651153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 51520233 - 51520298
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||| | ||||||||||| |||||| ||||| |||||| |||||| ||||| ||||||||||||    
T  51520233 tcaacactccacatcattttttctctcttaattaaacacttattcaacttttaccctctccaatgg 51520298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 52933808 - 52933757
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||||    
T  52933808 tcattttctctctctta-ttcaacactcattcaacttttacactctccaatgg 52933757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 52941443 - 52941392
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttac-ctctccaatgg 437  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||||    
T  52941443 tcattttctctctctta-ttcaacactcattcaacttttacactctccaatgg 52941392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 17485833 - 17485900
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17485833 attcccaacactccacatcattttctctctcataattcaacactcattcaatttttacctctctaatg 17485900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 24997096 - 24997162
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24997096 attcccaacactccacatcattttctctctcttaattcaacactcattcaatttttacctctccaat 24997162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 1073137 - 1073073
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1073137 tcaacactccacttcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 1073073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 4296829 - 4296761
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4296829 attcccaacactccacattattttctctctcttaattcaacactcattcaatttttacctctccaatgg 4296761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 12855035 - 12855103
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  12855035 attcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacctctccaatgg 12855103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 22351672 - 22351604
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22351672 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 22351604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 30822641 - 30822573
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  30822641 attcccaacactccacatcattttctctctcttcattcaacactcattcaatttttacctctccaatgg 30822573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 43021757 - 43021825
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  43021757 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctctccaatgg 43021825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 9117845 - 9117896
Alignment:
Q  386 tcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9117845 tcattttctctctcttaattcaacactcattcaatttttacctctccaatgg 9117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 8852073 - 8852141
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||    
T  8852073 attcccaacactccacatcattttctctctcttaattcaacactcatttaatttttatctctccaatgg 8852141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 17929313 - 17929245
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  17929313 attcccaacactccacatcattttctctctcataatttaacacccattcaatttttacatctccaatgg 17929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 36209532 - 36209464
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||| | ||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  36209532 attctcaacactccacatcattttctctttcttaattcaacactcattcaatttttatctctcctatgg 36209464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 44280012 - 44280074
Alignment:
Q  373 tcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaat 435  Q
    |||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  44280012 tcaacactccacatcattttctctctcttaattcaacaccctttcaatttttacctctccaat 44280074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 7763545 - 7763489
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta 425  Q
    |||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||    
T  7763545 attctcaacactccacatcattttctctctcttaattcaacacccattcaattttta 7763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 436
Target Start/End: Original strand, 39490116 - 39490226
Alignment:
Q  333 aatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta 425  Q
    ||||| |||| | |||||||||| ||||||||||||       |||| ||||| | || |||||| |||||||| |||||||||||||||||||||||||    
T  39490116 aatggtaaaaaaatttcaatacccttcaacacccactttttcaattcccaacactccaaatcattctctctctcttaattcaacactcattcaattttta 39490215  T
Q  426 cctctccaatg 436  Q
     ||||||||||    
T  39490216 tctctccaatg 39490226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 1308742 - 1308687
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||||    
T  1308742 cacatcattttctctctcataatccaacacacatttaatttttacttctccaatgg 1308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 7588562 - 7588492
Alignment:
Q  369 attctcaacatttcacatcattttctctctca--taattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | ||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  7588562 attcccaacactccacatcattttctctctctcttaattcaacacccattcaatttttacctctccaatgg 7588492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 14382996 - 14383051
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||||||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  14382996 cacatcattttctctctcttaattcaacaccttttcaatttttacctctccaatgg 14383051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 6362983 - 6363027
Alignment:
Q  383 acatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  6362983 acatcattttctctctcttaattcaacactcattcaacttttacc 6363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 36526837 - 36526904
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatg 436  Q
    |||| ||||| | ||||| |||||||||||| ||||| ||||| |||| |||||||||||||||||||    
T  36526837 attcccaacactccacattattttctctctcttaatttaacacccatttaatttttacctctccaatg 36526904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 9074282 - 9074214
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  9074282 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 9074214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 37245517 - 37245585
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||    
T  37245517 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttaccctctccaatgg 37245585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 436
Target Start/End: Original strand, 1987135 - 1987202
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatg 436  Q
    |||||||||| | ||||||||||||| |||| || |||||||||||||||| ||||| |||||||||||    
T  1987135 attctcaacactccacatcattttctatctctta-ttcaacactcattcaacttttaccctctccaatg 1987202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 14152125 - 14152067
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    |||| ||||| | |||||||||||||||||  ||||||||||| ||||||| |||||||    
T  14152125 attcccaacactccacatcattttctctcttttaattcaacacccattcaacttttacc 14152067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 927949 - 927893
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttac 426  Q
    |||| ||||| | |||||||||||||||||| || |||||||||||||||| ||||||    
T  927949 attcccaacactccacatcattttctctctctta-ttcaacactcattcaacttttac 927893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 5146756 - 5146711
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaatttttacc 427  Q
    |||||||||||||||||| | |||||||||||||| || |||||||    
T  5146756 cacatcattttctctctctttattcaacactcatttaacttttacc 5146711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 13151542 - 13151473
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||| ||||| | ||||| ||||| | |||| ||||||||||||||||||| ||||| ||||||||||||    
T  13151542 attcccaacactgcacataattttttttctcttaattcaacactcattcaacttttaccctctccaatgg 13151473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 31193028 - 31192973
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | |||||| |||||||||| ||||| ||||||||||||    
T  31193028 cacatcattttctctctc-ttattcaatactcattcaacttttaccctctccaatgg 31192973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 38901749 - 38901804
Alignment:
Q  382 cacatcattttctctctcataattcaacactcattcaattttta-cctctccaatgg 437  Q
    |||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||||||    
T  38901749 cacatcattttctctctc-ttattcaacactcgttcaacttttaccctctccaatgg 38901804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 57800 - 57732
Alignment:
Q  369 attctcaacatttcacatcattttctctctcataattcaacactcattcaatttttacctctccaatgg 437  Q
    |||| ||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  57800 attcccaacactccacatcattttctctctcttaattcaacacccattcaatttttacctcttcaatgg 57732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 5432 - 5316
Alignment:
Q  324 accatgtacaatgggaaaatattttcaatacctttcaacacccac-------attctcaacatttcacatcattttctctctcataattcaacactcatt 416  Q
    ||||| |||||||| ||||||| |||||||||  |||||||||||       |||| ||||| | ||||||||||||||| || ||||||||||  ||||    
T  5432 accatttacaatggcaaaatatattcaatacccctcaacacccactttttcaattcccaacactccacatcattttctctttcttaattcaacatccatt 5333  T
Q  417 caatttttacctctcca 433  Q
    |||||||||||||||||    
T  5332 caatttttacctctcca 5316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University